pmKate2-EB3 vector

cat.# FP316

The vector sequence has been compiled using the information from sequence databases, published literature, and other sources, together with partial sequences obtained by Evrogen. This vector has not been completely sequenced.

Download vector information: Data sheet (pdf) Sequence (txt) Restriction map (pdf) Restriction table (pdf)

Product Cat.# Size Price pmKate2-EB3 FP316 20 μg € 400 / 200* *50% discount on the second and subsequent vectors encoding same fluorescent protein or sensor ordered by the same customer. The price does not include delivery. The price varies in different countries. Please contact your local distributor for exact prices and delivery information. Vector type mammalian expression vector Reporter mKate2 Reporter codon usage mammalian Promoter for mKate2 PCMV IE Host cells mammalian Selection prokaryotic – kanamycin eukaryotic – neomycin (G418) Replication prokaryotic – pUC ori eukaryotic – SV40 ori Use far-red fluorescent labeling of EB3 protein

Vector description

pmKate2-EB3 is a mammalian expression vector encoding mKate2-EB3 fusion protein (see reporter description). The vector can be used for fluorescent labeling of EB3 protein in living cells.

Transiently transfected fox lung fibroblast cells (FoLu) expressing mKate2 fusion with human microtubule-associated protein EB3 (RP/EB family). Scale bar represents 10 μm. Image from Shcherbo et al., 2009.

mKate2 codon usage is optimized for high expression in mammalian cells (humanized) [Haas et al., 1996]. Human microtubule-associated EB3 protein is fused to the mKate2 N-terminus.

pmKate2-EB3 vector can be used as a source of mKate2-EB3 hybrid sequence. The vector backbone contains unique restriction sites that permit its excision and further insertion into expression vector of choice.

The vector backbone contains immediate early promoter of cytomegalovirus (P_{CMV IE}) for protein expression, SV40 origin for replication in mammalian cells expressing SV40 T-antigen, pUC origin of replication for propagation in E. coli, and f1 origin for single-stranded DNA production. SV40 polyadenylation signals (SV40 poly A) direct proper processing of the 3'-end of the reporter mRNA.

SV40 early promoter (P_SV40) provides neomycin resistance gene (Neo^r) expression to select stably transfected eukaryotic cells using G418. Bacterial promoter (P) provides kanamycin resistance gene expression (Kan^r) in E. coli. Kan^r/Neo^r gene is linked with herpes simplex virus (HSV) thymidine kinase (TK) polyadenylation signals.

Expression in mammalian cells

pmKate2-EB3 vector can be transfected into mammalian cells by any known transfection method. CMV promoter provides strong, constitutive expression of the mKate2-EB3 fusion in eukaryotic cells. If required, stable transformants can be selected using G418 [Gorman, 1985].

Propagation in E. coli

Suitable host strains for propagation in E. coli include DH5alpha, HB101, XL1-Blue, and other general purpose strains. Plasmid incompatibility group is pMB1/ColE1. The vector confers resistance to kanamycin (30 μg/ml) to E. coli hosts. Copy number in E. coli is about 500.

Location of features

P_{CMV IE}: 1-589
Enhancer region: 59-465
TATA box: 554-560
Transcription start point: 583
EB3: 652-1494
mKate2: 1516-2015
SV40 early mRNA polyadenylation signal
Polyadenylation signals: 2367-2372 & 2396-2401
mRNA 3' ends: 2405 & 2417
f1 single-strand DNA origin: 2464-2919
Bacterial promoter for expression of Kan^r gene
-35 region: 2981-2986
-10 region: 3004-3009
Transcription start point: 3016
SV40 origin of replication: 3260-3395
SV40 early promoter
Enhancer (72-bp tandem repeats): 3093-3164 & 3165-3236
21-bp repeats: 3240-3260, 3261-3281 & 3283-3303
Early promoter element: 3316-3322
Major transcription start points: 3312, 3350, 3356 & 3361
Kanamycin/neomycin resistance gene
Neomycin phosphotransferase coding sequences:
Start codon (ATG): 3444-3446
Stop codon: 4236-4238
G->A mutation to remove Pst I site: 3626
C->A (Arg to Ser) mutation to remove BssH II site: 3972
Herpes simplex virus (HSV) thymidine kinase (TK) polyadenylation signal
Polyadenylation signals: 4474-4479 & 4487-4492
pUC plasmid replication origin: 4823-5466