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RESEARCH PRODUCTS/Basic fluorescent proteins/TagFPs:

    TagRFP

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References citing TagRFP:
  • Pavlenko OS, Gra OA, Mustafaev ON, Kabarbaeva KV, Sadovskaya NS, Tyurin AA, Fadeev VS, Goldenkova-Pavlova IV.
    Thermostable Lichenase from Clostridium thermocellum as a Host Protein in the Domain Insertion Approach.
    Biochemistry (Mosc). 2019 Aug;84(8):931-940 doi: 10.1134/S0006297919080091
    pmid: 31522675
     
  • Granhøj J, Dimke H, Svenningsen P.
    A bacterial display system for effective selection of protein-biotin ligase BirA variants with novel peptide specificity.
    Sci Rep. 2019 Mar 11;9(1):4118 doi: 10.1038/s41598-019-40984-x
    pmid: 30858523
     
  • Mamontova AV, Solovyev ID, Savitsky AP, Shakhov AM, Lukyanov KA, Bogdanov AM.
    Bright GFP with subnanosecond fluorescence lifetime.
    Sci Rep. 2018 Sep 5;8(1):13224 doi: 10.1038/s41598-018-31687-w.
    pmid: 30185895
     
  • Antonova E, Glazova O, Gaponova A, Eremyan A, Zvereva S, Grebenkina N, Volkova N, Volchkov P.
    Successful CRISPR/Cas9 mediated homologous recombination in a chicken cell line.
    Version 2. F1000Res. 2018 Feb 28 [revised 2018 May 30];7:238 doi: 10.12688/f1000research.13457.2. eCollection 2018.
    pmid: 29946437
     
  • Schneider M, Prudic K, Pippel A, Klapperstuck M, Braam U, Muller CE, Schmalzing G, Markwardt F.
    Interaction of Purinergic P2X4 and P2X7 Receptor Subunits.
    Front Pharmacol. 2017 Nov 22;8:860 doi: 10.3389/fphar.2017.00860
    pmid: 29213241
     
  • Palmisano NJ, Rosario N, Wysocki M, Hong M, Grant B, Melendez A.
    The recycling endosome protein RAB-10 promotes autophagic flux and localization of the transmembrane protein ATG-9.
    Autophagy. 2017 Oct 3;13(10):1742-1753 doi: 10.1080/15548627.2017.1356976
    pmid: 28872980
     
  • Wasserberg D, Cabanas-Danes J, Prangsma J, O'Mahony S, Cazade PA, Tromp E, Blum C, Thompson D, Huskens J, Subramaniam V, Jonkheijm P.
    Controlling Protein Surface Orientation by Strategic Placement of Oligo-Histidine Tags.
    ACS Nano. 2017 Sep 26;11(9):9068-9083 doi: 10.1021/acsnano.7b03717
    pmid: 28850777
     
  • Norris DM, Yang P, Krycer JR, Fazakerley DJ, James DE, Burchfield JG.
    An improved Akt reporter reveals intra- and inter-cellular heterogeneity and oscillations in signal transduction.
    J Cell Sci. 2017 Aug 15;130(16):2757-2766 doi: 10.1242/jcs.205369
    pmid: 28663386
     
  • Hirano T, Stecker K, Munnik T, Xu H, Sato MH.
    Visualization of Phosphatidylinositol 3,5-Bisphosphate Dynamics by a Tandem ML1N-Based Fluorescent Protein Probe in Arabidopsis.
    Plant Cell Physiol. 2017 Jul 1;58(7):1185-1195 doi: 10.1093/pcp/pcx011
    pmid: 28158631
     
  • Jiang HN, Li Y, Cui ZJ.
    Photodynamic Physiology-Photonanomanipulations in Cellular Physiology with Protein Photosensitizers.
    Front Physiol. 2017 Apr 4;8:191 doi: 10.3389/fphys.2017.00191
    pmid: 28421000
     
  • Ganini D, Leinisch F, Kumar A, Jiang J, Tokar EJ, Malone CC, Petrovich RM, Mason RP.
    Fluorescent proteins such as eGFP lead to catalytic oxidative stress in cells.
    Redox Biol. 2017 Mar 10;12:462-468 doi: 10.1016/j.redox.2017.03.002
    pmid: 28334681
     
  • Jacq A, Pernot C, Martinez Y, Domergue F, Payre B, Jamet E, Burlat V, Pacquit VB.
    The Arabidopsis Lipid Transfer Protein 2 (AtLTP2) Is Involved in Cuticle-Cell Wall Interface Integrity and in Etiolated Hypocotyl Permeability.
    Front Plant Sci. 2017 Feb 27;8:263 doi: 10.3389/fpls.2017.00263
    pmid: 28289427
     
  • Klementieva NV, Pavlikov AI, Moiseev AA, Bozhanova NG, Mishina NM, Lukyanov SA, Zagaynova EV, Lukyanov KA, Mishin AS.
    Intrinsic blinking of red fluorescent proteins for super-resolution microscopy.
    Chem Commun (Camb). 2017 Jan 10;53(5):949-951 doi: 10.1039/c6cc09200d
    pmid: 28044165
     
  • Elbaz I, Zada D, Tovin A, Braun T, Lerer-Goldshtein T, Wang G, Mourrain P, Appelbaum L.
    Sleep-Dependent Structural Synaptic Plasticity of Inhibitory Synapses in the Dendrites of Hypocretin/Orexin Neurons.
    Mol Neurobiol. 2016 Oct 12;[Epub ahead of print] DOI: 10.1007/s12035-016-0175-x
    pmid: 27734337
     
  • Zada D, Tovin A, Lerer-Goldshtein T, Appelbaum L.
    Pharmacological and BBB-targeted genetic therapies for thyroid hormone-dependent hypomyelination.
    Dis Model Mech. 2016 Sep 23. pii: dmm.027;
    pmid: 27664134
     
  • Kuzmenkov AI, Nekrasova OV, Kudryashova KS, Peigneur S, Tytgat J, Stepanov AV, Kirpichnikov MP, Grishin EV, Feofanov AV, Vassilevski AA.
    Fluorescent protein-scorpion toxin chimera is a convenient molecular tool for studies of potassium channels.
    Sci Rep. 2016 Sep 21;6:33314 doi: 10.1038/srep33314
    pmid: 27650866
     
  • Manoharan GB, Enkvist E, Uri A.
    Combining chemical and genetic approaches for development of responsive FRET-based sensor systems for protein kinases.
    Biophys Chem. 2016 Jan 25;211:39-48 doi: 10.1016/j.bpc.2016.01.004
    pmid: 26874332
     
  • Mizuta Y, Kurihara D, Higashiyama T.
    Two-photon imaging with longer wavelength excitation in intact Arabidopsis tissues.
    Protoplasma. 2015 Sep;252(5):1231-40 doi: 10.1007/s00709-014-0754-5
    pmid: 25588923
     
  • Beilharz K, van Raaphorst R, Kjos M, Veening JW.
    Red fluorescent proteins for gene expression and protein localization studies in Streptococcus pneumoniae and efficient transformation with Gibson assembled DNA.
    Appl Environ Microbiol. 2015 Aug 7;pii: AEM.02033-15. [Epub ahead of print]
    pmid: 26253684
     
  • Goryashchenko AS, Khrenova MG, Bochkova AA, Ivashina TV, Vinokurov LM, Savitsky AP.
    Genetically Encoded FRET-Sensor Based on Terbium Chelate and Red Fluorescent Protein for Detection of Caspase-3 Activity.
    Int J Mol Sci. 2015 Jul 22;16(7):16642-54 doi: 10.3390/ijms160716642
    pmid: 26204836
     
  • Manoharan GB, Enkvist E, Kasari M, Viht K, Zenn M, Prinz A, Filhol O, Herberg FW, Uri A.
    FRET-based screening assay using small-molecule photoluminescent probes in lysate of cells overexpressing RFP-fused protein kinases.
    Anal Biochem. 2015 Jul 15;481:10-7 doi: 10.1016/j.ab.2015.04.009
    pmid: 25866074
     
  • Iram SH, Gruber SJ, Raguimova ON, Thomas DD, Robia SL.
    ATP-Binding Cassette Transporter Structure Changes Detected by Intramolecular Fluorescence Energy Transfer for High-Throughput Screening.
    Mol Pharmacol. 2015 Jul;88(1):84-94 doi: 10.1124/mol.114.096792
    pmid: 25924616
     
  • Carrel D, Hernandez K, Kwon M, Mau C, Trivedi MP, Brzustowicz LM, Firestein BL.
    Nitric oxide synthase 1 adaptor protein, a protein implicated in schizophrenia, controls radial migration of cortical neurons.
    Biol Psychiatry. 2015 Jun 1;77(11):969-78 doi: 10.1016/j.biopsych.2014.10.016
    pmid: 25542305
     
  • Schuster M, Kilaru S, Guo M, Sommerauer M, Lin C, Steinberg G.
    Red fluorescent proteins for imaging Zymoseptoria tritici during invasion of wheat.
    Fungal Genet Biol. 2015 Jun;79:132-40 doi: 10.1016/j.fgb.2015.03.025
    pmid: 26092800
     
  • Detert Oude Weme RG, Kovács ÁT, de Jong SJ, Veening JW, Siebring J, Kuipers OP.
    Single cell FRET analysis for the identification of optimal FRET-pairs in Bacillus subtilis using a prototype MEM-FLIM system.
    PLoS One. 2015 Apr 17;10(4):e0123239 doi: 10.1371/journal.pone.0123239
    pmid: 25886351
     
  • Khrenova M, Topol I, Collins J, Nemukhin A.
    Estimating orientation factors in the FRET theory of fluorescent proteins: the TagRFP-KFP pair and beyond.
    Biophys J. 2015 Jan 6;108(1):126-32 doi: 10.1016/j.bpj.2014.11.1859
    pmid: 25564859
     
  • Suzuki S, Tsukiyama T, Kaneko T, Imai H, Minami N.
    A hyperactive piggyBac transposon system is an easy-to-implement method for introducing foreign genes into mouse preimplantation embryos.
    J Reprod Dev. 2015;61(3):241-4 doi: 10.1262/jrd.2014-157
    pmid: 25740401
     
  • Mikhaylova M, Karpova A, Bär J, Bethge P, Yuanxiang P, Chen Y, Zuschratter W, Behnisch T, Kreutz MR.
    Cellular distribution of the NMDA-receptor activated synapto-nuclear messenger Jacob in the rat brain.
    Brain Struct Funct. 2014 May;219(3):843-60 doi: 10.1007/s00429-013-0539-1
    pmid: 23539133
  1. TagRFP fused to Jacob protein was expressed in neurons. Anti-tRFP antibody was used for TagRFP detection in western blotting.
  • Takano M, Tashiro E, Kitamura A, Maita H, Iguchi-Ariga SM, Kinjo M, Ariga H.
    Prefoldin prevents aggregation of α-synuclein.
    Brain Res. 2013 Oct 25;pii: S0006-8993(13)01425-X. doi: 10.1016/j.brainres.2013.10.034.
    pmid: 24513251
  1. TagRFP performed well in fuses with a wild-type α-synuclein and its pathogenic mutants. Also, TagRFP fluorescence was shown to be stable at pH 4.0 – 5.0. Anti-tRFP antibodies were used in Western blotting.
  2. Constructs used: pTagRFP-N vector.
  3. Expression system: Neuro-2a cell line.
  • Schwank G, Andersson-Rolf A, Koo BK, Sasaki N, Clevers H.
    Generation of BAC transgenic epithelial organoids.
    PLoS One. 2013 Oct 18;8(10):e76871 doi: 10.1371/journal.pone.0076871
    pmid: 24204693
     
  • Rosenfeld GE, Mercer EJ, Mason CE, Evans T.
    Small heat shock proteins Hspb7 and Hspb12 regulate early steps of cardiac morphogenesis.
    Dev Biol. 2013 Sep 15;381(2):389-400 doi: 10.1016/j.ydbio.2013.06.025
    pmid: 23850773
  1. A study of heart morphogenesis in transgenic zebrafish expressing mKate-Caax. Anti-tRFP antibody was used for immunohistochemical staining of intact fish embryos.
  2. Constructs used: mKate-Caax fusion.
  3. Expression system: Transgenic zebrafish line.
  • Rowland DC, Weible AP, Wickersham IR, Wu H, Mayford M, Witter MP, Kentros CG.
    Transgenically targeted rabies virus demonstrates a major monosynaptic projection from hippocampal area CA2 to medial entorhinal layer II neurons.
    J Neurosci. 2013 Sep 11;33(37):14889-98 doi: 10.1523/JNEUROSCI.1046-13.2013
    pmid: 24027288
     
  • Vogt A, Scull MA, Friling T, Horwitz JA, Donovan BM, Dorner M, Gerold G, Labitt RN, Rice CM, Ploss A.
    Recapitulation of the hepatitis C virus life-cycle in engineered murine cell lines.
    Virology. 2013 Sep;444(1-2):1-11 doi: 10.1016/j.virol.2013.05.036
    pmid: 23777661
     
  • Brenner MH, Cai D, Swanson JA, Ogilvie JP.
    Two-photon imaging of multiple fluorescent proteins by phase-shaping and linear unmixing with a single broadband laser.
    Opt Express. 2013 Jul 15;21(14):17256-64 doi: 10.1364/OE.21.017256
    pmid: 23938572
     
  • Alam R, Zylstra J, Fontaine DM, Branchini BR, Maye MM.
    Novel multistep BRET-FRET energy transfer using nanoconjugates of firefly proteins, quantum dots, and red fluorescent proteins.
    Nanoscale. 2013 Jun 21;5(12):5303-6 doi: 10.1039/c3nr01842c
    pmid: 23685756
     
  • Eremeeva EV, Markova SV, Vysotski ES.
    Highly active BRET-reporter based on yellow mutant of Renilla muelleri luciferase.
    Dokl Biochem Biophys. 2013 May-Jun;450(1):147-50 doi: 10.1134/S1607672913030095
    pmid: 23824457
     
  • Rivera-Molina F, Toomre D.
    Live-cell imaging of exocyst links its spatiotemporal dynamics to various stages of vesicle fusion.
    J Cell Biol. 2013 May 27;201(5):673-80 doi: 10.1083/jcb.201212103
    pmid: 23690179
     
  • Erhart D, Zimmermann M, Jacques O, Wittwer MB, Ernst B, Constable E, Zvelebil M, Beaufils F, Wymann MP.
    Chemical development of intracellular protein heterodimerizers.
    Chem Biol. 2013 Apr 18;20(4):549-57 doi: 10.1016/j.chembiol.2013.03.010
    pmid: 23601644
     
  • Mylle E, Codreanu MC, Boruc J, Russinova E.
    Emission spectra profiling of fluorescent proteins in living plant cells.
    Plant Methods. 2013 Apr 3;9(1):10 doi: 10.1186/1746-4811-9-10
    pmid: 23552272
     
  • Losón OC, Song Z, Chen H, Chan DC.
    Fis1, Mff, MiD49, and MiD51 mediate Drp1 recruitment in mitochondrial fission.
    Mol Biol Cell. 2013 Mar;24(5):659-67 doi: 10.1091/mbc.E12-10-0721
    pmid: 23283981
  1. Constructs used: Cox8-tagRFP, Cox8-Dendra2.
  2. Expression system: MEF cell line.
  3. Irradiation: For photoconversion of Cox8-Dendra2, a 405-nm laser at 4% laser power was used to photoconvert mitochondria in a 13 × 2 μm region.
  4. Detection system: Zeiss LSM 710 confocal microscope.
  • Wasserberg D, Nicosia C, Tromp EE, Subramaniam V, Huskens J, Jonkheijm P.
    Oriented protein immobilization using covalent and noncovalent chemistry on a thiol-reactive self-reporting surface.
    J Am Chem Soc. 2013 Feb 27;135(8):3104-11 doi: 10.1021/ja3102133
    pmid: 23379762
     
  • Dragoi AM, Talman AM, Agaisse H.
    Bruton's tyrosine kinase regulates Shigella flexneri dissemination in HT-29 intestinal cells.
    Infect Immun. 2013 Feb;81(2):598-607 doi: 10.1128/IAI.00853-12
    pmid: 23230296
  1. Constructs used: TagRFP fused to BTK.
  2. Expression system: HT-29, stable expression.
  3. Detection system: Nikon TE 2000 microscope.
  • Yoshihama Y, Izumisawa Y, Akimoto K, Satoh Y, Mizushima T, Satoh K, Chida K, Takagawa R, Akiyama H, Ichikawa Y, Kunisaki C, Inayama Y, Endo I, Nagashima Y, Ohno S.
    High expression of KIBRA in low atypical protein kinase C-expressing gastric cancer correlates with lymphatic invasion and poor prognosis.
    Cancer Sci. 2013 Feb;104(2):259-65 doi: 10.1111/cas.12066
    pmid: 23163744
  1. Anti-tRFP antibody was used for immunocytochemical staining of cancer cells, transfected with TagRFP-KIBRA.
  2. Constructs used: TagRFP-KIBRA fusion.
  • Bonekamp NA, Islinger M, Lázaro MG, Schrader M.
    Cytochemical detection of peroxisomes and mitochondria.
    Methods Mol Biol. 2013;931:467-82 doi: 10.1007/978-1-62703-056-4_24
    pmid: 23027018
  1. Protocols for dual peroxisomes and mitochondria staining.
  • Karlsson T, Bolshakova A, Magalhães MA, Loitto VM, Magnusson KE.
    Fluxes of water through aquaporin 9 weaken membrane-cytoskeleton anchorage and promote formation of membrane protrusions.
    PLoS One. 2013;8(4):e59901 doi: 10.1371/journal.pone.0059901
    pmid: 23573219
     
  • Tanaka Y, Shibahara K, Nakagawa T.
    Development of gateway binary vectors R4L1pGWB possessing the bialaphos resistance gene (bar) and the tunicamycin resistance gene as markers for promoter analysis in plants.
    Biosci Biotechnol Biochem. 2013;77(8):1795-7
    pmid: 23924715
     
  • Wickersham IR, Sullivan HA, Seung HS.
    Axonal and subcellular labelling using modified rabies viral vectors.
    Nat Commun. 2013;4:2332 doi: 10.1038/ncomms3332
    pmid: 23945836
     
  • Sakurai C, Hashimoto H, Nakanishi H, Arai S, Wada Y, Sun-Wada GH, Wada I, Hatsuzawa K.
    SNAP-23 regulates phagosome formation and maturation in macrophages.
    Mol Biol Cell. 2012 Dec;23(24):4849-63 doi: 10.1091/mbc.E12-01-0069
    pmid: 23087210
     
  • Salomonnson E, Mihalko LA, Verkhusha VV, Luker KE, Luker GD.
    Cell-based and in vivo spectral analysis of fluorescent proteins for multiphoton microscopy.
    J Biomed Opt. 2012 Sep 1;17(9):96001 doi: 10.1117/1.JBO.17.9.096001
    pmid: 22975677
     
  • Zanet J, Jayo A, Plaza S, Millard T, Parsons M, Stramer B.
    Fascin promotes filopodia formation independent of its role in actin bundling.
    J Cell Biol. 2012 May 14;197(4):477-86 doi: 10.1083/jcb.201110135
    pmid: 22564415
     
  • Ryan SD, Bhanot K, Ferrier A, De Repentigny Y, Chu A, Blais A, Kothary R.
    Microtubule stability, Golgi organization, and transport flux require dystonin-a2-MAP1B interaction.
    J Cell Biol. 2012 Mar 19;196(6):727-42 doi: 10.1083/jcb.201107096
    pmid: 22412020
     
  • Goh T, Joi S, Mimura T, Fukaki H.
    The establishment of asymmetry in Arabidopsis lateral root founder cells is regulated by LBD16/ASL18 and related LBD/ASL proteins.
    Development. 2012 Mar;139(5):883-93 doi: 10.1242/dev.071928
    pmid: 22278921
     
  • Navaroli DM, Bellvé KD, Standley C, Lifshitz LM, Cardia J, Lambright D, Leonard D, Fogarty KE, Corvera S.
    Rabenosyn-5 defines the fate of the transferrin receptor following clathrin-mediated endocytosis.
    Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):E471-80 doi: 10.1073/pnas.1115495109
    pmid: 22308388
     
  • Svistunova DM, Musinova YR, Polyakov VY, Sheval EV.
    A simple method for the immunocytochemical detection of proteins inside nuclear structures that are inaccessible to specific antibodies.
    J Histochem Cytochem. 2012 Feb;60(2):152-8 doi: 10.1369/0022155411429704
    pmid: 22114257
     
  • Lobert VH, Stenmark H.
    The ESCRT machinery mediates polarization of fibroblasts through regulation of myosin light chain.
    J Cell Sci. 2012 Jan 1;125(Pt 1):29-36 doi: 10.1242/jcs.088310
    pmid: 22266905
     
  • Murakami T, Yang SP, Xie L, Kawano T, Fu D, Mukai A, Bohm C, Chen F, Robertson J, Suzuki H, Tartaglia GG, Vendruscolo M, Kaminski Schierle GS, Chan FT, Moloney A, Crowther D, Kaminski CF, Zhen M, St George-Hyslop P.
    ALS mutations in FUS cause neuronal dysfunction and death in Caenorhabditis elegans by a dominant gain-of-function mechanism.
    Hum Mol Genet. 2012 Jan 1;21(1):1-9 doi: 10.1093/hmg/ddr417
    pmid: 21949354
     
  • Eaton CJ, Cabrera IE, Servin JA, Wright SJ, Cox MP, Borkovich KA.
    The Guanine Nucleotide Exchange Factor RIC8 Regulates Conidial Germination through Gα Proteins in Neurospora crassa.
    PLoS One. 2012;7(10):e48026 doi: 10.1371/journal.pone.0048026
    pmid: 23118921
     
  • Miranda JG, Weaver AL, Qin Y, Park JG, Stoddard CI, Lin MZ, Palmer AE.
    New alternately colored FRET sensors for simultaneous monitoring of Zn(2+) in multiple cellular locations.
    PLoS One. 2012;7(11):e49371 doi: 10.1371/journal.pone.0049371
    pmid: 23173058
     
  • Savitsky AP, Rusanov AL, Zherdeva VV, Gorodnicheva TV, Khrenova MG, Nemukhin AV.
    FLIM-FRET Imaging of Caspase-3 Activity in Live Cells Using Pair of Red Fluorescent Proteins.
    Theranostics. 2012;2(2):215-26 doi: 10.7150/thno.3885
    pmid: 22375160
     
  • Saito C, Uemura T, Awai C, Ueda T, Abe H, Nakano A.
    Qualitative difference between "bulb" membranes and other vacuolar membranes.
    Plant Signal Behav. 2011 Dec;6(12):1914-7
    pmid: 22105033
     
  • Egami Y, Fukuda M, Araki N.
    Rab35 regulates phagosome formation through recruitment of ACAP2 in macrophages during FcγR-mediated phagocytosis.
    J Cell Sci. 2011 Nov 1;124(Pt 21):3557-67 doi: 10.1242/jcs.083881
    pmid: 22045739
     
  • Currie JD, Stewman S, Schimizzi G, Slep KC, Ma A, Rogers SL.
    The microtubule lattice and plus-end association of Drosophila Mini spindles is spatially regulated to fine-tune microtubule dynamics.
    Mol Biol Cell. 2011 Nov;22(22):4343-61 doi: 10.1091/mbc.E11-06-0520
    pmid: 21965297
     
  • Ciesek S, Westhaus S, Wicht M, Wappler I, Henschen S, Sarrazin C, Hamdi N, Abdelaziz AI, Strassburg CP, Wedemeyer H, Manns MP, Pietschmann T, von Hahn T.
    Impact of intra- and interspecies variation of occludin on its function as coreceptor for authentic hepatitis C virus particles.
    J Virol. 2011 Aug;85(15):7613-21 doi: 10.1128/JVI.00212-11
    pmid: 21632765
     
  • Dragulescu-Andrasi A, Chan CT, De A, Massoud TF, Gambhir SS.
    Bioluminescence resonance energy transfer (BRET) imaging of protein-protein interactions within deep tissues of living subjects.
    Proc Natl Acad Sci U S A. 2011 Jul 19;108(29):12060-5 doi: 10.1073/pnas.1100923108
    pmid: 21730157
     
  • Orth JD, Kohler RH, Foijer F, Sorger PK, Weissleder R, Mitchison TJ.
    Analysis of mitosis and antimitotic drug responses in tumors by in vivo microscopy and single-cell pharmacodynamics.
    Cancer Res. 2011 Jul 1;71(13):4608-16 doi: 10.1158/0008-5472.CAN-11-0412
    pmid: 21712408
     
  • Schoggins JW, Wilson SJ, Panis M, Murphy MY, Jones CT, Bieniasz P, Rice CM.
    A diverse range of gene products are effectors of the type I interferon antiviral response.
    Nature. 2011 Apr 28;472(7344):481-5 doi: 10.1038/nature09907
    pmid: 21478870
     
  • Francis SS, Sfakianos J, Lo B, Mellman I.
    A hierarchy of signals regulates entry of membrane proteins into the ciliary membrane domain in epithelial cells.
    J Cell Biol. 2011 Apr 4;193(1):219-33 doi: 10.1083/jcb.201009001
    pmid: 21444686
     
  • Goto S, Mano S, Nakamori C, Nishimura M.
    Arabidopsis ABERRANT PEROXISOME MORPHOLOGY9 is a peroxin that recruits the PEX1-PEX6 complex to peroxisomes.
    Plant Cell. 2011 Apr;23(4):1573-87 doi: 10.1105/tpc.110.080770
    pmid: 21487094
     
  • Mader CC, Oser M, Magalhaes MA, Bravo-Cordero JJ, Condeelis J, Koleske AJ, Gil-Henn H.
    An EGFR-Src-Arg-cortactin pathway mediates functional maturation of invadopodia and breast cancer cell invasion.
    Cancer Res. 2011 Mar 1;71(5):1730-41 doi: 10.1158/0008-5472.CAN-10-1432
    pmid: 21257711
     
  • Ragàs X, Cooper LP, White JH, Nonell S, Flors C.
    Quantification of photosensitized singlet oxygen production by a fluorescent protein.
    Chemphyschem. 2011 Jan 17;12(1):161-5 doi: 10.1002/cphc.201000919
    pmid: 21226197
     
  • Cornfine S, Himmel M, Kopp P, El Azzouzi K, Wiesner C, Krüger M, Rudel T, Linder S.
    The kinesin KIF9 and reggie/flotillin proteins regulate matrix degradation by macrophage podosomes.
    Mol Biol Cell. 2011 Jan 15;22(2):202-15 doi: 10.1091/mbc.E10-05-0394
    pmid: 21119006
     
  • Mutoh H, Perron A, Akemann W, Iwamoto Y, Knöpfel T.
    Optogenetic monitoring of membrane potentials.
    Exp Physiol. 2011 Jan;96(1):13-8 doi: 10.1113/expphysiol.2010.053942
    pmid: 20851856
     
  • Destaing O, Planus E, Bouvard D, Oddou C, Badowski C, Bossy V, Raducanu A, Fourcade B, Albiges-Rizo C, Block MR.
    beta1A integrin is a master regulator of invadosome organization and function.
    Mol Biol Cell. 2010 Dec;21(23):4108-19 doi: 10.1091/mbc.E10-07-0580
    pmid: 20926684
     
  • Rusanov AL, Ivashina TV, Vinokurov LM, Fiks II, Orlova AG, Turchin IV, Meerovich IG, Zherdeva VV, Savitsky AP.
    Lifetime imaging of FRET between red fluorescent proteins.
    J Biophotonics. 2010 Dec;3(12):774-83 doi: 10.1002/jbio.201000065
    pmid: 20925107
  1. Constructs used: mammalian and bacterial expression vectors encoding a FRET pair of TagRFP and KFP-Red linked by a peptide containing DEVD caspase-3 cleavage site (subcloned from pKindling-Red-N vector).
  2. Expression system: BL21(DE3) E. coli starin and human melanoma cell line melKor.
  3. Detection system: fluorescence lifetime imaging microscopy (FLIM) and fluorescence lifetime whole-body imaging (FLBI).
  • Erdel F, Schubert T, Marth C, Längst G, Rippe K.
    Human ISWI chromatin-remodeling complexes sample nucleosomes via transient binding reactions and become immobilized at active sites.
    Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19873-8 doi: 10.1073/pnas.1003438107
    pmid: 20974961
     
  • Ohashi Y, Munro S.
    Membrane delivery to the yeast autophagosome from the Golgi-endosomal system.
    Mol Biol Cell. 2010 Nov 15;21(22):3998-4008 doi: 10.1091/mbc.E10-05-0457
    pmid: 20861302
     
  • Fantin A, Vieira JM, Gestri G, Denti L, Schwarz Q, Prykhozhij S, Peri F, Wilson SW, Ruhrberg C.
    Tissue macrophages act as cellular chaperones for vascular anastomosis downstream of VEGF-mediated endothelial tip cell induction.
    Blood. 2010 Aug 5;116(5):829-40 doi: 10.1182/blood-2009-12-257832
    pmid: 20404134
     
  • Dudgeon DD, Shinde S, Hua Y, Shun TY, Lazo JS, Strock CJ, Giuliano KA, Taylor DL, Johnston PA, Johnston PA.
    Implementation of a 220,000-compound HCS campaign to identify disruptors of the interaction between p53 and hDM2 and characterization of the confirmed hits.
    J Biomol Screen. 2010 Aug;15(7):766-82 doi: 10.1177/1087057110375304
    pmid: 20639499
     
  • Dudgeon DD, Shinde SN, Shun TY, Lazo JS, Strock CJ, Giuliano KA, Taylor DL, Johnston PA, Johnston PA.
    Characterization and optimization of a novel protein-protein interaction biosensor high-content screening assay to identify disruptors of the interactions between p53 and hDM2.
    Assay Drug Dev Technol. 2010 Aug;8(4):437-58 doi: 10.1089/adt.2010.0281
    pmid: 20662736
     
  • Friedrich MW, Aramuni G, Mank M, Mackinnon JA, Griesbeck O.
    Imaging CREB activation in living cells.
    J Biol Chem. 2010 Jul 23;285(30):23285-95 doi: 10.1074/jbc.M110.124545
    pmid: 20484048
     
  • Kohaar I, Ploss A, Korol E, Mu K, Schoggins JW, O'Brien TR, Rice CM, Prokunina-Olsson L.
    Splicing diversity of the human OCLN gene and its biological significance for hepatitis C virus entry.
    J Virol. 2010 Jul;84(14):6987-94 doi: 10.1128/JVI.00196-10
    pmid: 20463075
     
  • Fruhwirth GO, Ameer-Beg S, Cook R, Watson T, Ng T, Festy F.
    Fluorescence lifetime endoscopy using TCSPC for the measurement of FRET in live cells.
    Opt Express. 2010 May 24;18(11):11148-58 doi: 10.1364/OE.18.011148
    pmid: 20588974
     
  • Subach FV, Patterson GH, Renz M, Lippincott-Schwartz J, Verkhusha VV.
    Bright monomeric photoactivatable red fluorescent protein for two-color super-resolution sptPALM of live cells.
    J Am Chem Soc. 2010 May 12;132(18):6481-91 doi: 10.1021/ja100906g
    pmid: 20394363
     
  • Subach OM, Malashkevich VN, Zencheck WD, Morozova KS, Piatkevich KD, Almo SC, Verkhusha VV.
    Structural characterization of acylimine-containing blue and red chromophores in mTagBFP and TagRFP fluorescent proteins.
    Chem Biol. 2010 Apr 23;17(4):333-41 doi: 10.1016/j.chembiol.2010.03.005
    pmid: 20416505
  1. Constructs used: pBAB/HisB-based bacterial expression vectors encoding TagBFP or TagRFP.
  2. Expression system: E. coli LMG194 starin.
  3. Detection system: crystal structure of TagBFP and TagRFP fluorescent proteins.
  • Berepiki A, Lichius A, Shoji JY, Tilsner J, Read ND.
    F-actin dynamics in Neurospora crassa.
    Eukaryot Cell. 2010 Apr;9(4):547-57 doi: 10.1128/EC.00253-09
    pmid: 20139238
     
  • Fujimoto M, Arimura S, Ueda T, Takanashi H, Hayashi Y, Nakano A, Tsutsumi N.
    Arabidopsis dynamin-related proteins DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis.
    Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):6094-9 doi: 10.1073/pnas.0913562107
    pmid: 20231465
     
  • Piatkevich KD, Hulit J, Subach OM, Wu B, Abdulla A, Segall JE, Verkhusha VV.
    Monomeric red fluorescent proteins with a large Stokes shift.
    Proc Natl Acad Sci U S A. 2010 Mar 23;107(12):5369-74 doi: 10.1073/pnas.0914365107
    pmid: 20212155
     
  • Swan LE, Tomasini L, Pirruccello M, Lunardi J, De Camilli P.
    Two closely related endocytic proteins that share a common OCRL-binding motif with APPL1.
    Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3511-6 doi: 10.1073/pnas.0914658107
    pmid: 20133602
     
  • Nakamura S, Mano S, Tanaka Y, Ohnishi M, Nakamori C, Araki M, Niwa T, Nishimura M, Kaminaka H, Nakagawa T, Sato Y, Ishiguro S.
    Gateway binary vectors with the bialaphos resistance gene, bar, as a selection marker for plant transformation.
    Biosci Biotechnol Biochem. 2010;74(6):1315-9
    pmid: 20530878
     
  • Pletnev S, Gurskaya NG, Pletneva NV, Lukyanov KA, Chudakov DM, Martynov VI, Popov VO, Kovalchuk MV, Wlodawer A, Dauter Z, Pletnev V.
    Structural basis for phototoxicity of the genetically encoded photosensitizer KillerRed.
    J Biol Chem. 2009 Nov 13;284(46):32028-39 doi: 10.1074/jbc.M109.054973
    pmid: 19737938
     
  • Zou L, Zhou J, Zhang J, Li J, Liu N, Chai L, Li N, Liu T, Li L, Xie Z, Liu H, Wan Y, Wu Y.
    The GTPase Rab3b/3c-positive recycling vesicles are involved in cross-presentation in dendritic cells.
    Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15801-6 doi: 10.1073/pnas.0905684106
    pmid: 19717423
     
  • Marshall TW, Aloor HL, Bear JE.
    Coronin 2A regulates a subset of focal-adhesion-turnover events through the cofilin pathway.
    J Cell Sci. 2009 Sep 1;122(Pt 17):3061-9 doi: 10.1242/jcs.051482
    pmid: 19654210
     
  • Oser M, Yamaguchi H, Mader CC, Bravo-Cordero JJ, Arias M, Chen X, Desmarais V, van Rheenen J, Koleske AJ, Condeelis J.
    Cortactin regulates cofilin and N-WASp activities to control the stages of invadopodium assembly and maturation.
    J Cell Biol. 2009 Aug 24;186(4):571-87 doi: 10.1083/jcb.200812176
    pmid: 19704022
     
  • Sun Z, Juriani A, Meininger GA, Meissner KE.
    Probing cell surface interactions using atomic force microscope cantilevers functionalized for quantum dot-enabled Forster resonance energy transfer.
    J Biomed Opt. 2009 Jul-Aug;14(4):040502 doi: 10.1117/1.3174429
    pmid: 19725707
     
  • Martin K, Kopperud K, Chakrabarty R, Banerjee R, Brooks R, Goodin MM.
    Transient expression in Nicotiana benthamiana fluorescent marker lines provides enhanced definition of protein localization, movement and interactions in planta.
    Plant J. 2009 Jul;59(1):150-62 doi: 10.1111/j.1365-313X.2009.03850.x
    pmid: 19309457
     
  • Jagasia R, Steib K, Englberger E, Herold S, Faus-Kessler T, Saxe M, Gage FH, Song H, Lie DC.
    GABA-cAMP response element-binding protein signaling regulates maturation and survival of newly generated neurons in the adult hippocampus.
    J Neurosci. 2009 Jun 24;29(25):7966-77 doi: 10.1523/JNEUROSCI.1054-09.2009
    pmid: 19553437
     
  • Anderson DD, Stover PJ.
    SHMT1 and SHMT2 are functionally redundant in nuclear De novo thymidylate biosynthesis.
    PLoS One. 2009 Jun 9;4(6):e5839 doi: 10.1371/journal.pone.0005839
    pmid: 19513116
     
  • Bohnacker T, Marone R, Collmann E, Calvez R, Hirsch E, Wymann MP.
    PI3Kgamma adaptor subunits define coupling to degranulation and cell motility by distinct PtdIns(3,4,5)P3 pools in mast cells.
    Sci Signal. 2009 Jun 9;2(74):ra27 doi: 10.1126/scisignal.2000259
    pmid: 19509406
     
  • Vander Heyden AB, Naismith TV, Snapp EL, Hodzic D, Hanson PI.
    LULL1 retargets TorsinA to the nuclear envelope revealing an activity that is impaired by the DYT1 dystonia mutation.
    Mol Biol Cell. 2009 Jun;20(11):2661-72 doi: 10.1091/mbc.E09-01-0094
    pmid: 19339278
     
  • Sun W, Li Y, Chen L, Chen H, You F, Zhou X, Zhou Y, Zhai Z, Chen D, Jiang Z.
    ERIS, an endoplasmic reticulum IFN stimulator, activates innate immune signaling through dimerization.
    Proc Natl Acad Sci U S A. 2009 May 26;106(21):8653-8 doi: 10.1073/pnas.0900850106
    pmid: 19433799
     
  • Bulankina AV, Deggerich A, Wenzel D, Mutenda K, Wittmann JG, Rudolph MG, Burger KN, Honing S.
    TIP47 functions in the biogenesis of lipid droplets.
    J Cell Biol. 2009 May 18;185(4):641-55 doi: 10.1083/jcb.200812042
    pmid: 19451273
     
  • Kobrinsky E, Abrahimi P, Duong SQ, Thomas S, Harry JB, Patel C, Lao QZ, Soldatov NM.
    Effect of Ca(v)beta subunits on structural organization of Ca(v)1.2 calcium channels.
    PLoS ONE. 2009 May 18;4(5):e5587 doi: 10.1371/journal.pone.0005587
    pmid: 19492014
     
  • Nowotschin S, Eakin GS, Hadjantonakis AK.
    Live-imaging fluorescent proteins in mouse embryos: multi-dimensional, multi-spectral perspectives.
    Trends Biotechnol. 2009 May;27(5):266-76 doi: 10.1016/j.tibtech.2009.02.006
    pmid: 19339068
     
  • Samarkina ON, Popova AG, Gvozdik EY, Chkalina AV, Zvyagin IV, Rylova YV, Rudenko NV, Lusta KA, Kelmanson IV, Gorokhovatsky AY, Vinokurov LM.
    Universal and rapid method for purification of GFP-like proteins by the ethanol extraction.
    Protein Expr Purif. 2009 May;65(1):108-13 doi: 10.1016/j.pep.2008.11.008
    pmid: 19084068
  1. Constructs used: pQE30-based bacterial expression vectors encoding TagCFP, TagGFP, TagYFP, TagRFP, TurboGFP, TurboRFP, Dendra2, TurboFP602 and KillerRed.
  2. Expression system: E. coli strain M15 (pREP4).
  3. Detection system: purified recombinant FPs.
  • Shcherbo D, Souslova EA, Goedhart J, Chepurnykh TV, Gaintzeva A, Shemiakina II, Gadella TW, Lukyanov S, Chudakov DM.
    Practical and reliable FRET/FLIM pair of fluorescent proteins.
    BMC Biotechnol. 2009 Mar 25;9:24 doi: 10.1186/1472-6750-9-24
    pmid: 19321010
     
  • Drobizhev M, Tillo S, Makarov NS, Hughes TE, Rebane A.
    Absolute two-photon absorption spectra and two-photon brightness of orange and red fluorescent proteins.
    J Phys Chem B. 2009 Jan 29;113(4):855-9 doi: 10.1021/jp8087379
    pmid: 19127988
     
  • Kawashima T, Okuno H, Nonaka M, Adachi-Morishima A, Kyo N, Okamura M, Takemoto-Kimura S, Worley PF, Bito H.
    Synaptic activity-responsive element in the Arc/Arg3.1 promoter essential for synapse-to-nucleus signaling in activated neurons.
    Proc Natl Acad Sci U S A. 2009 Jan 6;106(1):316-21 doi: 10.1073/pnas.0806518106
    pmid: 19116276
     
  • Goedhart J, Gadella TWJ Jr
    Fluorescence resonance energy transfer imaging of PKC signalling in living cells using genetically encoded fluorescent probes.
    J R Soc Interface. 2009;6(Suppl_1):S27-34 www.ncbi.nlm.nih.gov
     
  • Hazelwood LA, Free RB, Cabrera DM, Skinbjerg M, Sibley DR.
    Reciprocal modulation of function between the D1 and D2 dopamine receptors and the Na+,K+-ATPase.
    J Biol Chem. 2008 Dec 26;283(52):36441-53 doi: 10.1074/jbc.M805520200
    pmid: 18984584
     
  • Grant DM, Zhang W, McGhee EJ, Bunney TD, Talbot CB, Kumar S, Munro I, Dunsby C, Neil MA, Katan M, French PM.
    Multiplexed FRET to image multiple signaling events in live cells.
    Biophys J. 2008 Nov 15;95(10):L69-71 doi: 10.1529/biophysj.108.139204
    pmid: 18757561
     
  • Ebine K, Okatani Y, Uemura T, Goh T, Shoda K, Niihama M, Morita MT, Spitzer C, Otegui MS, Nakano A, Ueda T.
    A SNARE complex unique to seed plants is required for protein storage vacuole biogenesis and seed development of Arabidopsis thaliana.
    Plant Cell. 2008 Nov;20(11):3006-21 doi: 10.1105/tpc.107.057711
    pmid: 18984676
     
  • Niwa S, Tanaka Y, Hirokawa N.
    KIF1Bβ- and KIF1A-mediated axonal transport of presynaptic regulator Rab3 occurs in a GTP-dependent manner through DENN/MADD.
    Nat Cell Biol. 2008 Nov;10(11):1269-79 doi: 10.1038/ncb1785
    pmid: 18849981
     
  • Subach OM, Gundorov IS, Yoshimura M, Subach FV, Zhang J, Gruenwald D, Souslova EA, Chudakov DM, Verkhusha VV.
    Conversion of Red Fluorescent Protein into a Bright Blue Probe.
    Chem Biol. 2008 Oct 20;15(10):1116-24 doi: 10.1016/j.chembiol.2008.08.006
    pmid: 18940671
     
  • Ouyang M, Sun J, Chien S, Wang Y.
    Determination of hierarchical relationship of Src and Rac at subcellular locations with FRET biosensors.
    Proc Natl Acad Sci U S A. 2008 Sep 23;105(38):14353-8 doi: 10.1073/pnas.0807537105
    pmid: 18799748
     
  • Held MA, Boulaflous A, Brandizzi F.
    Advances in fluorescent protein-based imaging for the analysis of plant endomembranes.
    Plant Physiol. 2008 Aug;147(4):1469-81 doi: 10.1104/pp.108.120147
    pmid: 18678739
     
  • Stepanenko OV, Verkhusha VV, Kuznetsova IM, Uversky VN, Turoverov KK.
    Fluorescent proteins as biomarkers and biosensors: throwing color lights on molecular and cellular processes.
    Curr Protein Pept Sci. 2008 Aug;9(4):338-69 http://asb.aecom.yu.edu
    pmid: 18691124
     
  • Oikawa T, Itoh T, Takenawa T.
    Sequential signals toward podosome formation in NIH-src cells.
    J Cell Biol. 2008 Jul 14;182(1):157-69 doi: 10.1083/jcb.200801042
    pmid: 18606851
     
  • Shaner NC, Lin MZ, McKeown MR, Steinbach PA, Hazelwood KL, Davidson MW, Tsien RY.
    Improving the photostability of bright monomeric orange and red fluorescent proteins.
    Nat Methods. 2008 Jun;5(6):545-51 doi: 10.1038/nmeth.1209
    pmid: 18454154
     
  • Kwok S, Lee C, Sanchez SA, Hazlett TL, Gratton E, Hayashi Y.
    Genetically encoded probe for fluorescence lifetime imaging of CaMKII activity.
    Biochem Biophys Res Commun. 2008 May 2;369(2):519-25 doi: 10.1016/j.bbrc.2008.02.070
    pmid: 18302935
     
  • Kadereit B, Kumar P, Wang WJ, Miranda D, Snapp EL, Severina N, Torregroza I, Evans T, Silver DL.
    Evolutionarily conserved gene family important for fat storage.
    Proc Natl Acad Sci U S A. 2008 Jan 8;105(1):94-9
    pmid: 18160536
     
  • Shaner NC, Patterson GH, Davidson MW.
    Advances in fluorescent protein technology.
    J Cell Sci. 2007 Dec 15;120(Pt 24):4247-60
    pmid: 18057027
     
  • Goodin MM, Chakrabarty R, Banerjee R, Yelton S, Debolt S.
    New gateways to discovery.
    Plant Physiol. 2007 Dec;145(4):1100-9
    pmid: 18056860
     
  • Merzlyak EM, Goedhart J, Shcherbo D, Bulina ME, Shcheglov AS, Fradkov AF, Gaintzeva A, Lukyanov KA, Lukyanov S, Gadella TW, Chudakov DM.
    Bright monomeric red fluorescent protein with an extended fluorescence lifetime.
    Nat Methods. 2007 Jul;4(7):555-7
    pmid: 17572680
     

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