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References citing basic fluorescent proteins:

Granhøj J, Dimke H, Svenningsen P.
A bacterial display system for effective selection of protein-biotin ligase BirA variants with novel peptide specificity.
Sci Rep. 2019 Mar 11;9(1):4118 doi: 10.1038/s41598-019-40984-x
pmid: 30858523
Pavlenko OS, Gra OA, Mustafaev ON, Kabarbaeva KV, Sadovskaya NS, Tyurin AA, Fadeev VS, Goldenkova-Pavlova IV.
Thermostable Lichenase from Clostridium thermocellum as a Host Protein in the Domain Insertion Approach.
Biochemistry (Mosc). 2019 Aug;84(8):931-940 doi: 10.1134/S0006297919080091
pmid: 31522675
Antonova E, Glazova O, Gaponova A, Eremyan A, Zvereva S, Grebenkina N, Volkova N, Volchkov P.
Successful CRISPR/Cas9 mediated homologous recombination in a chicken cell line.
Version 2. F1000Res. 2018 Feb 28 [revised 2018 May 30];7:238 doi: 10.12688/f1000research.13457.2. eCollection 2018.
pmid: 29946437
Mamontova AV, Solovyev ID, Savitsky AP, Shakhov AM, Lukyanov KA, Bogdanov AM.
Bright GFP with subnanosecond fluorescence lifetime.
Sci Rep. 2018 Sep 5;8(1):13224 doi: 10.1038/s41598-018-31687-w.
pmid: 30185895
Berthelsen MF, Callesen MM, Ostergaard TS, Liu Y, Li R, Callesen H, Dagnaes-Hansen F, Hamilton-Dutoit S, Jakobsen JE, Thomsen MK.
Pancreas specific expression of oncogenes in a porcine model.
Transgenic Res. 2017 Jun 29.;[Epub ahead of print] doi: 10.1007/s11248-017-0031-4
pmid: 28664456
Bozhanova NG, Baranov MS, Sarkisyan KS, Gritcenko R, Mineev KS, Golodukhina SV, Baleeva NS, Lukyanov KA, Mishin AS.
Yellow and Orange Fluorescent Proteins with Tryptophan-based Chromophores.
ACS Chem Biol. 2017 Jul 21;12(7):1867-1873 doi: 10.1021/acschembio.7b00337
pmid: 28525263
de Jong NW, van der Horst T, van Strijp JA, Nijland R.
Fluorescent reporters for markerless genomic integration in Staphylococcus aureus.
Sci Rep. 2017 Mar 7;7:43889 doi: 10.1038/srep43889
pmid: 28266573
Ganini D, Leinisch F, Kumar A, Jiang J, Tokar EJ, Malone CC, Petrovich RM, Mason RP.
Fluorescent proteins such as eGFP lead to catalytic oxidative stress in cells.
Redox Biol. 2017 Mar 10;12:462-468 doi: 10.1016/j.redox.2017.03.002
pmid: 28334681
Gensberger ET, Kostic T.
Green fluorescent protein labeling of food pathogens Yersinia enterocolitica and Yersinia pseudotuberculosis.
J Microbiol Methods. 2017 Jan;132:21-26 doi: 10.1016/j.mimet.2016.11.008
pmid: 27838541
Hirano T, Stecker K, Munnik T, Xu H, Sato MH.
Visualization of Phosphatidylinositol 3,5-Bisphosphate Dynamics by a Tandem ML1N-Based Fluorescent Protein Probe in Arabidopsis.
Plant Cell Physiol. 2017 Jul 1;58(7):1185-1195 doi: 10.1093/pcp/pcx011
pmid: 28158631
Ibáñez-Fonseca A, Alonso M, Arias FJ, Rodriguez-Cabello JC.
Förster Resonance Energy Transfer-Paired Hydrogel Forming Silk-Elastin-Like Recombinamers by Recombinant Conjugation of Fluorescent Proteins.
Bioconjug Chem. 2017 Feb 15;[Epub ahead of print] doi: 10.1021/acs.bioconjchem.6b00738
pmid: 28158945
Jacq A, Pernot C, Martinez Y, Domergue F, Payre B, Jamet E, Burlat V, Pacquit VB.
The Arabidopsis Lipid Transfer Protein 2 (AtLTP2) Is Involved in Cuticle-Cell Wall Interface Integrity and in Etiolated Hypocotyl Permeability.
Front Plant Sci. 2017 Feb 27;8:263 doi: 10.3389/fpls.2017.00263
pmid: 28289427
Jiang HN, Li Y, Cui ZJ.
Photodynamic Physiology-Photonanomanipulations in Cellular Physiology with Protein Photosensitizers.
Front Physiol. 2017 Apr 4;8:191 doi: 10.3389/fphys.2017.00191
pmid: 28421000
Kashkin KN, Chernov IP, Didych DA, Sverdlov ED.
Construction of a combinatorial library of chimeric tumor-specific promoters.
Biotechniques. 2017 Sep 1;63(3):107-116 doi: 10.2144/000114586
pmid: 28911314
Klementieva NV, Pavlikov AI, Moiseev AA, Bozhanova NG, Mishina NM, Lukyanov SA, Zagaynova EV, Lukyanov KA, Mishin AS.
Intrinsic blinking of red fluorescent proteins for super-resolution microscopy.
Chem Commun (Camb). 2017 Jan 10;53(5):949-951 doi: 10.1039/c6cc09200d
pmid: 28044165
Kost LA, Nikitin ES, Ivanova VO, Sung U, Putintseva EV, Chudakov DM, Balaban PM, Lukyanov KA, Bogdanov AM.
Insertion of the voltage-sensitive domain into circularly permuted red fluorescent protein as a design for genetically encoded voltage sensor.
PLoS One. 2017 Sep 1;12(9):e0184225 doi: 10.1371/journal.pone.0184225
pmid: 28863184
Lee MY, Ha SE, Park C, Park PJ, Fuchs R, Wei L, Jorgensen BG, Redelman D, Ward SM, Sanders KM, Ro S.
Transcriptome of interstitial cells of Cajal reveals unique and selective gene signatures.
PLoS One. 2017 Apr 20;12(4):e0176031 doi: 10.1371/journal.pone.0176031
pmid: 28426719
Norris DM, Yang P, Krycer JR, Fazakerley DJ, James DE, Burchfield JG.
An improved Akt reporter reveals intra- and inter-cellular heterogeneity and oscillations in signal transduction.
J Cell Sci. 2017 Aug 15;130(16):2757-2766 doi: 10.1242/jcs.205369
pmid: 28663386
Obeid MA, Elburi A, Young LC, Mullen AB, Tate RJ, Ferro VA.
Formulation of Nonionic Surfactant Vesicles (NISV) Prepared by Microfluidics for Therapeutic Delivery of siRNA into Cancer Cells.
Mol Pharm. 2017 Jul 3;14(7):2450-2458 doi: 10.1021/acs.molpharmaceut.7b00352
pmid: 28570823
Palmisano NJ, Rosario N, Wysocki M, Hong M, Grant B, Melendez A.
The recycling endosome protein RAB-10 promotes autophagic flux and localization of the transmembrane protein ATG-9.
Autophagy. 2017 Oct 3;13(10):1742-1753 doi: 10.1080/15548627.2017.1356976
pmid: 28872980
Schneider M, Prudic K, Pippel A, Klapperstuck M, Braam U, Muller CE, Schmalzing G, Markwardt F.
Interaction of Purinergic P2X4 and P2X7 Receptor Subunits.
Front Pharmacol. 2017 Nov 22;8:860 doi: 10.3389/fphar.2017.00860
pmid: 29213241
Vogel S, Aswendt M, Nelles M, Henn N, Schneider G, Hoehn M.
Initial graft size and not the innate immune response limit survival of engrafted neural stem cells.
J Tissue Eng Regen Med. 2017 Jun 9.; doi: 10.1002/term.2497
pmid: 28599089
Wasserberg D, Cabanas-Danes J, Prangsma J, O'Mahony S, Cazade PA, Tromp E, Blum C, Thompson D, Huskens J, Subramaniam V, Jonkheijm P.
Controlling Protein Surface Orientation by Strategic Placement of Oligo-Histidine Tags.
ACS Nano. 2017 Sep 26;11(9):9068-9083 doi: 10.1021/acsnano.7b03717
pmid: 28850777
Edalat L, Stegen B, Klumpp L, Haehl E, Schilbach K, Lukowski R, Kühnle M, Bernhardt G, Buschauer A, Zips D, Ruth P, Huber SM.
BK K channel blockade inhibits radiation-induced migration/brain infiltration of glioblastoma cells.
Oncotarget. 2016 Feb 16;[Epub ahead of print] doi: 10.18632/oncotarget.7423
pmid: 26893360
Elbaz I, Zada D, Tovin A, Braun T, Lerer-Goldshtein T, Wang G, Mourrain P, Appelbaum L.
Sleep-Dependent Structural Synaptic Plasticity of Inhibitory Synapses in the Dendrites of Hypocretin/Orexin Neurons.
Mol Neurobiol. 2016 Oct 12;[Epub ahead of print] DOI: 10.1007/s12035-016-0175-x
pmid: 27734337
Kong Y, Yang D, Cirillo SL, Li S, Akin A, Francis KP, Maloney T, Cirillo JD.
Application of Fluorescent Protein Expressing Strains to Evaluation of Anti-Tuberculosis Therapeutic Efficacy In Vitro and In Vivo.
PLoS One. 2016 Mar 2;11(3):e0149972 doi: 10.1371/journal.pone.0149972
pmid: 26934495
Kuzmenkov AI, Nekrasova OV, Kudryashova KS, Peigneur S, Tytgat J, Stepanov AV, Kirpichnikov MP, Grishin EV, Feofanov AV, Vassilevski AA.
Fluorescent protein-scorpion toxin chimera is a convenient molecular tool for studies of potassium channels.
Sci Rep. 2016 Sep 21;6:33314 doi: 10.1038/srep33314
pmid: 27650866
Manoharan GB, Enkvist E, Uri A.
Combining chemical and genetic approaches for development of responsive FRET-based sensor systems for protein kinases.
Biophys Chem. 2016 Jan 25;211:39-48 doi: 10.1016/j.bpc.2016.01.004
pmid: 26874332
Rouxel RN, Mérour E, Biacchesi S, Brémont M.
Efficient Co-Replication of Defective Novirhabdovirus.
Viruses. 2016 Mar 4;8(3):pii: E69 doi: 10.3390/v8030069
pmid: 26959049
Schomann T, Mezzanotte L, Lourens IM, de Groot JC, Frijns JH, Huisman MA.
Lentiviral transduction and subsequent loading with nanoparticles do not affect cell viability and proliferation in hair-follicle-bulge-derived stem cells in vitro.
Contrast Media Mol Imaging. 2016 Nov;11(6):550-560 doi: 10.1002/cmmi.1717
pmid: 27976505
Wu M, Wei C, Lian Z, Liu R, Zhu C, Wang H, Cao J, Shen Y, Zhao F, Zhang L, Mu Z, Wang Y, Wang X, Du L, Wang C.
Rosa26-targeted sheep gene knock-in via CRISPR-Cas9 system.
Sci Rep. 2016 Apr 11;6:24360 doi: 10.1038/srep24360
pmid: 27063570
Xu J, Zhu W, Guo Y, Jiang C, Hussain N, Meng L, Lu S.
Construction of Conveniently Screening pLKO.1-TRC Vector Tagged with TurboGFP.
Appl Biochem Biotechnol. 2016 Oct 11;[Epub ahead of print] DOI: 10.1007/s12010-016-2242-1
pmid: 27730520
Zada D, Tovin A, Lerer-Goldshtein T, Appelbaum L.
Pharmacological and BBB-targeted genetic therapies for thyroid hormone-dependent hypomyelination.
Dis Model Mech. 2016 Sep 23. pii: dmm.027;
pmid: 27664134
Zhao Z, Qi F, Liu T, Fu W.
Effect of miR-146a and miR-155 on cardiac xenotransplantation.
Exp Ther Med. 2016 Dec;12(6):3972-3978 doi: 10.3892/etm.2016.3867
pmid: 28101175
Zhou H, Zheng C, Su J, Chen B, Fu Y, Xie Y, Tang Q, Chou SH, He J.
Characterization of a natural triple-tandem c-di-GMP riboswitch and application of the riboswitch-based dual-fluorescence reporter.
Sci Rep. 2016 Feb 19;6:20871 doi: 10.1038/srep20871
pmid: 26892868
Balalaeva IV, Sokolova EA, Brilkina AA, Deyev SM, Petrov RV.
Far-red fluorescent cell line for preclinical study of HER2-targeted agents.
Dokl Biochem Biophys. 2015 Nov;465(1):410-2 doi: 10.1134/S1607672915060174
pmid: 26728737
Beilharz K, van Raaphorst R, Kjos M, Veening JW.
Red fluorescent proteins for gene expression and protein localization studies in Streptococcus pneumoniae and efficient transformation with Gibson assembled DNA.
Appl Environ Microbiol. 2015 Aug 7;pii: AEM.02033-15. [Epub ahead of print]
pmid: 26253684
Carrel D, Hernandez K, Kwon M, Mau C, Trivedi MP, Brzustowicz LM, Firestein BL.
Nitric oxide synthase 1 adaptor protein, a protein implicated in schizophrenia, controls radial migration of cortical neurons.
Biol Psychiatry. 2015 Jun 1;77(11):969-78 doi: 10.1016/j.biopsych.2014.10.016
pmid: 25542305
Detert Oude Weme RG, Kovács ÁT, de Jong SJ, Veening JW, Siebring J, Kuipers OP.
Single cell FRET analysis for the identification of optimal FRET-pairs in Bacillus subtilis using a prototype MEM-FLIM system.
PLoS One. 2015 Apr 17;10(4):e0123239 doi: 10.1371/journal.pone.0123239
pmid: 25886351
Goryashchenko AS, Khrenova MG, Bochkova AA, Ivashina TV, Vinokurov LM, Savitsky AP.
Genetically Encoded FRET-Sensor Based on Terbium Chelate and Red Fluorescent Protein for Detection of Caspase-3 Activity.
Int J Mol Sci. 2015 Jul 22;16(7):16642-54 doi: 10.3390/ijms160716642
pmid: 26204836
Iram SH, Gruber SJ, Raguimova ON, Thomas DD, Robia SL.
ATP-Binding Cassette Transporter Structure Changes Detected by Intramolecular Fluorescence Energy Transfer for High-Throughput Screening.
Mol Pharmacol. 2015 Jul;88(1):84-94 doi: 10.1124/mol.114.096792
pmid: 25924616
Khrenova M, Topol I, Collins J, Nemukhin A.
Estimating orientation factors in the FRET theory of fluorescent proteins: the TagRFP-KFP pair and beyond.
Biophys J. 2015 Jan 6;108(1):126-32 doi: 10.1016/j.bpj.2014.11.1859
pmid: 25564859
Kinnear E, Caproni LJ, Tregoning JS.
A Comparison of Red Fluorescent Proteins to Model DNA Vaccine Expression by Whole Animal In Vivo Imaging.
PLoS One. 2015 Jun 19;10(6):e0130375 doi: 10.1371/journal.pone.0130375
pmid: 26091084
Lackner DH, Carré A, Guzzardo PM, Banning C, Mangena R, Henley T, Oberndorfer S, Gapp BV, Nijman SM, Brummelkamp TR, Bürckstümmer T
A generic strategy for CRISPR-Cas9-mediated gene tagging.
Nat Commun. 2015 Dec 17;6:10237 doi: 10.1038/ncomms10237
pmid: 26674669
Luker KE, Pata P, Shemiakina II, Pereverzeva A, Stacer AC, Shcherbo DS, Pletnev VZ, Skolnaja M, Lukyanov KA, Luker GD, Pata I, Chudakov DM.
Comparative study reveals better far-red fluorescent protein for whole body imaging.
Sci Rep. 2015 Jun 2;5:10332 doi: 10.1038/srep10332
pmid: 26035795
Manoharan GB, Enkvist E, Kasari M, Viht K, Zenn M, Prinz A, Filhol O, Herberg FW, Uri A.
FRET-based screening assay using small-molecule photoluminescent probes in lysate of cells overexpressing RFP-fused protein kinases.
Anal Biochem. 2015 Jul 15;481:10-7 doi: 10.1016/j.ab.2015.04.009
pmid: 25866074
Meng J, Hotard AL, Currier MG, Lee S, Stobart CC, Moore ML.
Respiratory Syncytial Virus Attachment Glycoprotein Contribution to Infection Depends on the Specific Fusion Protein.
J Virol. 2015 Oct 14;90(1):245-53 doi: 10.1128/JVI.02140-15
pmid: 26468535
Mizuta Y, Kurihara D, Higashiyama T.
Two-photon imaging with longer wavelength excitation in intact Arabidopsis tissues.
Protoplasma. 2015 Sep;252(5):1231-40 doi: 10.1007/s00709-014-0754-5
pmid: 25588923
Pereverzev AP, Gurskaya NG, Ermakova GV, Kudryavtseva EI, Markina NM, Kotlobay AA, Lukyanov SA, Zaraisky AG, Lukyanov KA.
Method for quantitative analysis of nonsense-mediated mRNA decay at the single cell level.
Sci Rep. 2015 Jan 12;5:7729 doi: 10.1038/srep07729
pmid: 25578556
Plessner M, Melak M, Chinchilla P, Baarlink C, Grosse R.
Nuclear F-actin formation and reorganization upon cell spreading.
J Biol Chem. 2015 May 1;290(18):11209-16 doi: 10.1074/jbc.M114.627166
pmid: 25759381
Schuster M, Kilaru S, Guo M, Sommerauer M, Lin C, Steinberg G.
Red fluorescent proteins for imaging Zymoseptoria tritici during invasion of wheat.
Fungal Genet Biol. 2015 Jun;79:132-40 doi: 10.1016/j.fgb.2015.03.025
pmid: 26092800
Suzuki S, Tsukiyama T, Kaneko T, Imai H, Minami N.
A hyperactive piggyBac transposon system is an easy-to-implement method for introducing foreign genes into mouse preimplantation embryos.
J Reprod Dev. 2015;61(3):241-4 doi: 10.1262/jrd.2014-157
pmid: 25740401
Yanaka Y, Muramatsu T, Uetake H, Kozaki KI, Inazawa J.
miR-544a induces epithelial-mesenchymal transition through the activation of WNT signaling pathway in gastric cancer.
Carcinogenesis. 2015 Aug 11;pii: bgv106. [Epub ahead of print]
pmid: 26264654
Zdobnova T, Sokolova E, Stremovskiy O, Karpenko D, Telford W, Turchin I, Balalaeva I, Deyev S.
A novel far-red fluorescent xenograft model of ovarian carcinoma for preclinical evaluation of HER2-targeted immunotoxins.
Oncotarget. 2015 Oct 13;6(31):30919-28 doi: 10.18632/oncotarget.5130
pmid: 26436696
Zhu MH, Sung TS, O'Driscoll K, Koh SD, Sanders KM.
Intracellular Ca(2+) release from endoplasmic reticulum regulates slow wave currents and pacemaker activity of interstitial cells of Cajal.
Am J Physiol Cell Physiol. 2015 Apr 15;308(8):C608-20 doi: 10.1152/ajpcell.00360.2014
pmid: 25631870
Cobine CA, Sotherton AG, Peri LE, Sanders KM, Ward SM, Keef KD.
Nitrergic neuromuscular transmission in the mouse internal anal sphincter is accomplished by multiple pathways and postjunctional effector cells.
Am J Physiol Gastrointest Liver Physiol. 2014 Dec 1;307(11):G1057-72 doi: 10.1152/ajpgi.00331.2014
pmid: 25301187
Hajizadeh-Sikaroodi S, Hosseini A, Fallah A, Estiri H, Noormohammadi Z, Salehi M, Ghaderian SM, Akhavan Niaki H, Soleimani M, Kazemi B.
Lentiviral Mediating Genetic Engineered Mesenchymal Stem Cells for Releasing IL-27 as a Gene Therapy Approach for Autoimmune Diseases.
Cell J. 2014;16(3):255-62
pmid: 24611150
Mikhaylova M, Karpova A, Bär J, Bethge P, Yuanxiang P, Chen Y, Zuschratter W, Behnisch T, Kreutz MR.
Cellular distribution of the NMDA-receptor activated synapto-nuclear messenger Jacob in the rat brain.
Brain Struct Funct. 2014 May;219(3):843-60 doi: 10.1007/s00429-013-0539-1
pmid: 23539133
Sergeeva IA, Hooijkaas IB, Van Der Made I, Jong WM, Creemers EE, Christoffels VM.
A transgenic mouse model for the simultaneous monitoring of ANF and BNP gene activity during heart development and disease.
Cardiovasc Res. 2014 Jan 1;101(1):78-86 doi: 10.1093/cvr/cvt228
pmid: 24104878
Zhang X, Wang D, Zhao S, Shen Z.
A double built-in containment strategy for production of recombinant proteins in transgenic rice.
PLoS One. 2014 Dec 22;9(12):e115459 doi: 10.1371/journal.pone.0115459
pmid: 25531447
Abe H, Wakabayashi R, Yonemura H, Yamada S, Goto M, Kamiya N.
Split spy0128 as a potent scaffold for protein cross-linking and immobilization.
Bioconjug Chem. 2013 Feb 20;24(2):242-50 doi: 10.1021/bc300606b
pmid: 23350748
Alam R, Zylstra J, Fontaine DM, Branchini BR, Maye MM.
Novel multistep BRET-FRET energy transfer using nanoconjugates of firefly proteins, quantum dots, and red fluorescent proteins.
Nanoscale. 2013 Jun 21;5(12):5303-6 doi: 10.1039/c3nr01842c
pmid: 23685756
Arampatzi P, Gialitakis M, Makatounakis T, Papamatheakis J.
Gene-specific factors determine mitotic expression and bookmarking via alternate regulatory elements.
Nucleic Acids Res. 2013 Feb 1;41(4):2202-15 doi: 10.1093/nar/gks1365
pmid: 23303784
Baskaev KK, Kholodenko RV, Malakhova GV, Gaĭfullin NM, Korzeneva EA, Suntsova MV, Buzdin AA.
Experimental analysis of human specific protein coding open reading frame c11orf72.
Bioorg Khim. 2013 Mar-Apr;39(2):151-8
pmid: 23964515
Bertz A, Ehlers JE, Wöhl-Bruhn S, Bunjes H, Gericke KH, Menzel H.
Mobility of green fluorescent protein in hydrogel-based drug-delivery systems studied by anisotropy and fluorescence recovery after photobleaching.
Macromol Biosci. 2013 Feb;13(2):215-26 doi: 10.1002/mabi.201200325
pmid: 23255283
Bonekamp NA, Islinger M, Lázaro MG, Schrader M.
Cytochemical detection of peroxisomes and mitochondria.
Methods Mol Biol. 2013;931:467-82 doi: 10.1007/978-1-62703-056-4_24
pmid: 23027018
Bose JL, Fey PD, Bayles KW.
Genetic tools to enhance the study of gene function and regulation in Staphylococcus aureus.
Appl Environ Microbiol. 2013 Apr;79(7):2218-24 doi: 10.1128/AEM.00136-13
pmid: 23354696
Brenner MH, Cai D, Swanson JA, Ogilvie JP.
Two-photon imaging of multiple fluorescent proteins by phase-shaping and linear unmixing with a single broadband laser.
Opt Express. 2013 Jul 15;21(14):17256-64 doi: 10.1364/OE.21.017256
pmid: 23938572
Cai D, Cohen KB, Luo T, Lichtman JW, Sanes JR.
Improved tools for the Brainbow toolbox.
Nat Methods. 2013 Jun;10(6):540-7
pmid: 23866336
Didych DA, Shamsutdinov MF, Smirnov NA, Akopov SB, Monastyrskaya GS, Uspenskaya NY, Nikolaev LG, Sverdlov ED.
Human PSENEN and U2AF1L4 genes are concertedly regulated by a genuine bidirectional promoter.
Gene. 2013 Feb 15;515(1):34-41 doi: 10.1016/j.gene.2012.11.058
pmid: 23246698
Donai K, Kuroda K, Guo Y, So KH, Sone H, Kobayashi M, Nishimori K, Fukuda T.
Establishment of a reporter system to monitor silencing status in induced pluripotent stem cell lines.
Anal Biochem. 2013 Dec 1;443(1):104-12 doi: 10.1016/j.ab.2013.08.014
pmid: 23973628
Dragoi AM, Talman AM, Agaisse H.
Bruton's tyrosine kinase regulates Shigella flexneri dissemination in HT-29 intestinal cells.
Infect Immun. 2013 Feb;81(2):598-607 doi: 10.1128/IAI.00853-12
pmid: 23230296
Eijlander RT, Kuipers OP.
Live-cell imaging tool optimization to study gene expression levels and dynamics in single cells of Bacillus cereus.
Appl Environ Microbiol. 2013 Sep;79(18):5643-51 doi: 10.1128/AEM.01347-13
pmid: 23851094
Eremeeva EV, Markova SV, Vysotski ES.
Highly active BRET-reporter based on yellow mutant of Renilla muelleri luciferase.
Dokl Biochem Biophys. 2013 May-Jun;450(1):147-50 doi: 10.1134/S1607672913030095
pmid: 23824457
Erhart D, Zimmermann M, Jacques O, Wittwer MB, Ernst B, Constable E, Zvelebil M, Beaufils F, Wymann MP.
Chemical development of intracellular protein heterodimerizers.
Chem Biol. 2013 Apr 18;20(4):549-57 doi: 10.1016/j.chembiol.2013.03.010
pmid: 23601644
Gaur NA, Hasek J, Brickner DG, Qiu H, Zhang F, Wong CM, Malcova I, Vasicova P, Brickner JH, Hinnebusch AG.
Vps factors are required for efficient transcription elongation in budding yeast.
Genetics. 2013 Mar;193(3):829-51 doi: 10.1534/genetics.112.146308
pmid: 23335340
Gaytán P, Roldán-Salgado A.
Elimination of redundant and stop codons during the chemical synthesis of degenerate oligonucleotides. Combinatorial testing on the chromophore region of the red fluorescent protein mKate.
ACS Synth Biol. 2013 Aug 16;2(8):453-62 doi: 10.1021/sb3001326
pmid: 23654278
Guess MG, Barthel KK, Pugach EK, Leinwand LA.
Measuring microRNA reporter activity in skeletal muscle using hydrodynamic limb vein injection of plasmid DNA combined with in vivo imaging.
Skelet Muscle. 2013 Aug 1;3(1):19 doi: 10.1186/2044-5040-3-19
pmid: 23915674
Karlsson T, Bolshakova A, Magalhães MA, Loitto VM, Magnusson KE.
Fluxes of water through aquaporin 9 weaken membrane-cytoskeleton anchorage and promote formation of membrane protrusions.
PLoS One. 2013;8(4):e59901 doi: 10.1371/journal.pone.0059901
pmid: 23573219
Kitaguchi T, Oya M, Wada Y, Tsuboi T, Miyawaki A.
Extracellular calcium influx activates adenylate cyclase 1 and potentiates insulin secretion in MIN6 cells.
Biochem J. 2013 Mar 1;450(2):365-73 doi: 10.1042/BJ20121022
pmid: 23282092
Klimenko OV, Shtilman MI.
Transfection of Kasumi-1 cells with a new type of polymer carriers loaded with miR-155 and antago-miR-155.
Cancer Gene Ther. 2013 Apr;20(4):237-41 doi: 10.1038/cgt.2013.11
pmid: 23538486
Knorr DA, Bock A, Brentjens RJ, Kaufman DS.
Engineered human embryonic stem cell-derived lymphocytes to study in vivo trafficking and immunotherapy.
Stem Cells Dev. 2013 Jul 1;22(13):1861-9 doi: 10.1089/scd.2012.0608
pmid: 23421330
Krylova I, Kumar RR, Kofoed EM, Schaufele F.
A versatile, bar-coded nuclear marker/reporter for live cell fluorescent and multiplexed high content imaging.
PLoS One. 2013 May 14;8(5):e63286 doi: 10.1371/journal.pone.0063286
pmid: 23691010
Lee S, Lim WA, Thorn KS.
Improved Blue, Green, and Red Fluorescent Protein Tagging Vectors for S. cerevisiae.
PLoS One. 2013 Jul 2;8(7):e67902 doi: 10.1371/journal.pone.0067902
pmid: 23844123
Lin CP, Kim C, Smith SO, Neiman AM.
A highly redundant gene network controls assembly of the outer spore wall in S. cerevisiae.
PLoS Genet. 2013;9(8):e1003700 doi: 10.1371/journal.pgen.1003700
pmid: 23966878
Loots GG, Bergmann A, Hum NR, Oldenburg CE, Wills AE, Hu N, Ovcharenko I, Harland RM.
Interrogating transcriptional regulatory sequences in Tol2-mediated Xenopus transgenics.
PLoS One. 2013 Jul 16;8(7):e68548 doi: 10.1371/journal.pone.0068548
pmid: 23874664
Losón OC, Song Z, Chen H, Chan DC.
Fis1, Mff, MiD49, and MiD51 mediate Drp1 recruitment in mitochondrial fission.
Mol Biol Cell. 2013 Mar;24(5):659-67 doi: 10.1091/mbc.E12-10-0721
pmid: 23283981
Mylle E, Codreanu MC, Boruc J, Russinova E.
Emission spectra profiling of fluorescent proteins in living plant cells.
Plant Methods. 2013 Apr 3;9(1):10 doi: 10.1186/1746-4811-9-10
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Pletneva NV, Pletnev VZ, Souslova E, Chudakov DM, Lukyanov S, Martynov VI, Arhipova S, Artemyev I, Wlodawer A, Dauter Z, Pletnev S.
Yellow fluorescent protein phiYFPv (Phialidium): structure and structure-based mutagenesis.
Acta Crystallogr D Biol Crystallogr. 2013 Jun;69(Pt 6):1005-12 doi: 10.1107/S0907444913004034
pmid: 23695245
Rask L, Fregil M, Høgdall E, Mitchelmore C, Eriksen J.
Development of a metastatic fluorescent Lewis Lung carcinoma mouse model: Identification of mRNAs and microRNAs involved in tumor invasion.
Gene. 2013 Mar 15;517(1):72-81 doi: 10.1016/j.gene.2012.12.083
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Rendl M, Brandstetter T, Rühe J.
Time-resolved analysis of biological reactions based on heterogeneous assays in liquid plugs of nanoliter volume.
Anal Chem. 2013 Oct 15;85(20):9469-77 doi: 10.1021/ac401752j
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Rivera-Molina F, Toomre D.
Live-cell imaging of exocyst links its spatiotemporal dynamics to various stages of vesicle fusion.
J Cell Biol. 2013 May 27;201(5):673-80 doi: 10.1083/jcb.201212103
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Ronen M, Shalaby S, Horwitz BA.
Role of the transcription factor ChAP1 in cytoplasmic redox homeostasis: imaging with a genetically encoded sensor in the maize pathogen Cochliobolus heterostrophus.
Mol Plant Pathol. 2013 Oct;14(8):786-90 doi: 10.1111/mpp.12047
pmid: 23745603
Rosenfeld GE, Mercer EJ, Mason CE, Evans T.
Small heat shock proteins Hspb7 and Hspb12 regulate early steps of cardiac morphogenesis.
Dev Biol. 2013 Sep 15;381(2):389-400 doi: 10.1016/j.ydbio.2013.06.025
pmid: 23850773
Rowland DC, Weible AP, Wickersham IR, Wu H, Mayford M, Witter MP, Kentros CG.
Transgenically targeted rabies virus demonstrates a major monosynaptic projection from hippocampal area CA2 to medial entorhinal layer II neurons.
J Neurosci. 2013 Sep 11;33(37):14889-98 doi: 10.1523/JNEUROSCI.1046-13.2013
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Schwank G, Andersson-Rolf A, Koo BK, Sasaki N, Clevers H.
Generation of BAC transgenic epithelial organoids.
PLoS One. 2013 Oct 18;8(10):e76871 doi: 10.1371/journal.pone.0076871
pmid: 24204693
Takano M, Tashiro E, Kitamura A, Maita H, Iguchi-Ariga SM, Kinjo M, Ariga H.
Prefoldin prevents aggregation of α-synuclein.
Brain Res. 2013 Oct 25;pii: S0006-8993(13)01425-X. doi: 10.1016/j.brainres.2013.10.034.
pmid: 24513251
Tanaka Y, Shibahara K, Nakagawa T.
Development of gateway binary vectors R4L1pGWB possessing the bialaphos resistance gene (bar) and the tunicamycin resistance gene as markers for promoter analysis in plants.
Biosci Biotechnol Biochem. 2013;77(8):1795-7
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Vijftigschild LA, van der Ent CK, Beekman JM.
A novel fluorescent sensor for measurement of CFTR function by flow cytometry.
Cytometry A. 2013 Jun;83(6):576-84 doi: 10.1002/cyto.a.22275
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Vogt A, Scull MA, Friling T, Horwitz JA, Donovan BM, Dorner M, Gerold G, Labitt RN, Rice CM, Ploss A.
Recapitulation of the hepatitis C virus life-cycle in engineered murine cell lines.
Virology. 2013 Sep;444(1-2):1-11 doi: 10.1016/j.virol.2013.05.036
pmid: 23777661
Wang H, Chen NG, Minev BR, Zimmermann M, Aguilar RJ, Zhang Q, Sturm JB, Fend F, Yu YA, Cappello J, Lauer UM, Szalay AA.
Optical detection and virotherapy of live metastatic tumor cells in body fluids with vaccinia strains.
PLoS One. 2013 Sep 3;8(9):e71105 doi: 10.1371/journal.pone.0071105
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Wasserberg D, Nicosia C, Tromp EE, Subramaniam V, Huskens J, Jonkheijm P.
Oriented protein immobilization using covalent and noncovalent chemistry on a thiol-reactive self-reporting surface.
J Am Chem Soc. 2013 Feb 27;135(8):3104-11 doi: 10.1021/ja3102133
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Wickersham IR, Sullivan HA, Seung HS.
Axonal and subcellular labelling using modified rabies viral vectors.
Nat Commun. 2013;4:2332 doi: 10.1038/ncomms3332
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Xiang Z, Ren H, Hu YS, Coin I, Wei J, Cang H, Wang L.
Adding an unnatural covalent bond to proteins through proximity-enhanced bioreactivity.
Nat Methods. 2013 Sep;10(9):885-8 doi: 10.1038/nmeth.2595
pmid: 23913257
Yang Y, Xiang K, Yang YX, Wang YW, Zhang X, Cui Y, Wang H, Zhu QQ, Fan L, Liu Y, Cao A.
An individually coated near-infrared fluorescent protein as a safe and robust nanoprobe for in vivo imaging.
Nanoscale. 2013 Nov 7;5(21):10345-52 doi: 10.1039/c3nr02508j
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Yoshihama Y, Izumisawa Y, Akimoto K, Satoh Y, Mizushima T, Satoh K, Chida K, Takagawa R, Akiyama H, Ichikawa Y, Kunisaki C, Inayama Y, Endo I, Nagashima Y, Ohno S.
High expression of KIBRA in low atypical protein kinase C-expressing gastric cancer correlates with lymphatic invasion and poor prognosis.
Cancer Sci. 2013 Feb;104(2):259-65 doi: 10.1111/cas.12066
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Yu LN, Zhang QL, Li X, Hua X, Cui YM, Zhang NJ, Liao WT, Ding YQ.
Tiam1 transgenic mice display increased tumor invasive and metastatic potential of colorectal cancer after 1,2-dimethylhydrazine treatment.
PLoS One. 2013 Sep 12;8(9):e73077 doi: 10.1371/journal.pone.0073077
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Anderson DD, Woeller CF, Chiang EP, Shane B, Stover PJ.
Serine hydroxymethyltransferase anchors de novo thymidylate synthesis pathway to nuclear lamina for DNA synthesis.
J Biol Chem. 2012 Mar 2;287(10):7051-62 doi: 10.1074/jbc.M111.333120
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Cao C, Chen Y, Masood R, Sinha UK, Kobielak A.
α-Catulin Marks the Invasion Front of Squamous Cell Carcinoma and Is Important for Tumor Cell Metastasis.
Mol Cancer Res. 2012 Jul;10(7):892-903 doi: 10.1158/1541-7786.MCR-12-0169
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Caysa H, Hoffmann S, Luetzkendorf J, Mueller LP, Unverzagt S, Mäder K, Mueller T.
Monitoring of xenograft tumor growth and response to chemotherapy by non-invasive in vivo multispectral fluorescence imaging.
PLoS One. 2012;7(10):e47927 doi: 10.1371/journal.pone.0047927
pmid: 23112873
Chai Y, Li W, Feng G, Yang Y, Wang X, Ou G.
Live imaging of cellular dynamics during Caenorhabditis elegans postembryonic development.
Nat Protoc. 2012 Nov 8;7(12):2090-102 doi: 10.1038/nprot.2012.128
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Dower K, Filone CM, Hodges EN, Bjornson ZB, Rubins KH, Brown LE, Schaus S, Hensley LE, Connor JH.
Identification of a pyridopyrimidinone inhibitor of orthopoxviruses from a diversity-oriented synthesis library.
J Virol. 2012 Mar;86(5):2632-40 doi: 10.1128/JVI.05416-11
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Eaton CJ, Cabrera IE, Servin JA, Wright SJ, Cox MP, Borkovich KA.
The Guanine Nucleotide Exchange Factor RIC8 Regulates Conidial Germination through Gα Proteins in Neurospora crassa.
PLoS One. 2012;7(10):e48026 doi: 10.1371/journal.pone.0048026
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Goh T, Joi S, Mimura T, Fukaki H.
The establishment of asymmetry in Arabidopsis lateral root founder cells is regulated by LBD16/ASL18 and related LBD/ASL proteins.
Development. 2012 Mar;139(5):883-93 doi: 10.1242/dev.071928
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Gurskaya NG, Staroverov DB, Zhang L, Fradkov AF, Markina NM, Pereverzev AP, Lukyanov KA.
Analysis of alternative splicing of cassette exons at single-cell level using two fluorescent proteins.
Nucleic Acids Res. 2012 Apr 1;40(8):e57 doi: 10.1093/nar/gkr1314
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Hotard AL, Shaikh FY, Lee S, Yan D, Teng MN, Plemper RK, Crowe JE Jr, Moore ML.
A stabilized respiratory syncytial virus reverse genetics system amenable to recombination-mediated mutagenesis.
Virology. 2012 Dec 5;434(1):129-36 doi: 10.1016/j.virol.2012.09.022
pmid: 23062737
Huang V, Place RF, Portnoy V, Wang J, Qi Z, Jia Z, Yu A, Shuman M, Yu J, Li LC.
Upregulation of Cyclin B1 by miRNA and its implications in cancer.
Nucleic Acids Res. 2012 Feb;40(4):1695-707 doi: 10.1093/nar/gkr934
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Jacoby K, Metzger M, Shen BW, Certo MT, Jarjour J, Stoddard BL, Scharenberg AM.
Expanding LAGLIDADG endonuclease scaffold diversity by rapidly surveying evolutionary sequence space.
Nucleic Acids Res. 2012 Jun;40(11):4954-64 doi: 10.1093/nar/gkr1303
pmid: 22334611
Kyriazis GA, Soundarapandian MM, Tyrberg B.
Sweet taste receptor signaling in beta cells mediates fructose-induced potentiation of glucose-stimulated insulin secretion.
Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):E524-32 doi: 10.1073/pnas.1115183109
pmid: 22315413
Li B, Shahid R, Peshkepija P, Zimmer M.
Water Diffusion In And Out Of The β-Barrel Of GFP and The Fast Maturing Fluorescent Protein, TurboGFP.
Chem Phys. 2012 Jan 1;392(1):143-148
pmid: 22582003
Lobert VH, Stenmark H.
The ESCRT machinery mediates polarization of fibroblasts through regulation of myosin light chain.
J Cell Sci. 2012 Jan 1;125(Pt 1):29-36 doi: 10.1242/jcs.088310
pmid: 22266905
Miranda JG, Weaver AL, Qin Y, Park JG, Stoddard CI, Lin MZ, Palmer AE.
New alternately colored FRET sensors for simultaneous monitoring of Zn(2+) in multiple cellular locations.
PLoS One. 2012;7(11):e49371 doi: 10.1371/journal.pone.0049371
pmid: 23173058
Murakami T, Yang SP, Xie L, Kawano T, Fu D, Mukai A, Bohm C, Chen F, Robertson J, Suzuki H, Tartaglia GG, Vendruscolo M, Kaminski Schierle GS, Chan FT, Moloney A, Crowther D, Kaminski CF, Zhen M, St George-Hyslop P.
ALS mutations in FUS cause neuronal dysfunction and death in Caenorhabditis elegans by a dominant gain-of-function mechanism.
Hum Mol Genet. 2012 Jan 1;21(1):1-9 doi: 10.1093/hmg/ddr417
pmid: 21949354
Navaroli DM, Bellvé KD, Standley C, Lifshitz LM, Cardia J, Lambright D, Leonard D, Fogarty KE, Corvera S.
Rabenosyn-5 defines the fate of the transferrin receptor following clathrin-mediated endocytosis.
Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):E471-80 doi: 10.1073/pnas.1115495109
pmid: 22308388
Numata T, Sato K, Christmann J, Marx R, Mori Y, Okada Y, Wehner F.
The ΔC splice-variant of TRPM2 is the hypertonicity-induced cation channel in HeLa cells, and the ecto-enzyme CD38 mediates its activation.
J Physiol. 2012 Mar 1;590(Pt 5):1121-38 doi: 10.1113/jphysiol.2011.220947
pmid: 22219339
Pardo A, Stöcker M, Kampmeier F, Melmer G, Fischer R, Thepen T, Barth S.
In vivo imaging of immunotoxin treatment using Katushka-transfected A-431 cells in a murine xenograft tumour model.
Cancer Immunol Immunother. 2012 Oct;61(10):1617-26
pmid: 22350071
Pletnev S, Pletneva NV, Souslova EA, Chudakov DM, Lukyanov S, Wlodawer A, Dauter Z, Pletnev V.
Structural basis for bathochromic shift of fluorescence in far-red fluorescent proteins eqFP650 and eqFP670.
Acta Crystallogr D Biol Crystallogr. 2012 Sep;68(Pt 9):1088-97 doi: 10.1107/S0907444912020598
pmid: 22948909
Ray P, Lewin SA, Mihalko LA, Lesher-Perez SC, Takayama S, Luker KE, Luker GD.
Secreted CXCL12 (SDF-1) forms dimers under physiological conditions.
Biochem J. 2012 Mar 1;442(2):433-42 doi: 10.1042/BJ20111341
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Ryan SD, Bhanot K, Ferrier A, De Repentigny Y, Chu A, Blais A, Kothary R.
Microtubule stability, Golgi organization, and transport flux require dystonin-a2-MAP1B interaction.
J Cell Biol. 2012 Mar 19;196(6):727-42 doi: 10.1083/jcb.201107096
pmid: 22412020
Sakurai C, Hashimoto H, Nakanishi H, Arai S, Wada Y, Sun-Wada GH, Wada I, Hatsuzawa K.
SNAP-23 regulates phagosome formation and maturation in macrophages.
Mol Biol Cell. 2012 Dec;23(24):4849-63 doi: 10.1091/mbc.E12-01-0069
pmid: 23087210
Salomonnson E, Mihalko LA, Verkhusha VV, Luker KE, Luker GD.
Cell-based and in vivo spectral analysis of fluorescent proteins for multiphoton microscopy.
J Biomed Opt. 2012 Sep 1;17(9):96001 doi: 10.1117/1.JBO.17.9.096001
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Sanders KM, Zhu MH, Britton F, Koh SD, Ward SM.
Anoctamins and gastrointestinal smooth muscle excitability.
Exp Physiol. 2012 Feb;97(2):200-6 doi: 10.1113/expphysiol.2011.058248
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Savitsky AP, Rusanov AL, Zherdeva VV, Gorodnicheva TV, Khrenova MG, Nemukhin AV.
FLIM-FRET Imaging of Caspase-3 Activity in Live Cells Using Pair of Red Fluorescent Proteins.
Theranostics. 2012;2(2):215-26 doi: 10.7150/thno.3885
pmid: 22375160
Shemiakina II, Ermakova GV, Cranfill PJ, Baird MA, Evans RA, Souslova EA, Staroverov DB, Gorokhovatsky AY, Putintseva EV, Gorodnicheva TV, Chepurnykh TV, Strukova L, Lukyanov S, Zaraisky AG, Davidson MW, Chudakov DM, Shcherbo D.
A monomeric red fluorescent protein with low cytotoxicity.
Nat Commun. 2012 Nov 13;3:1204 doi: 10.1038/ncomms2208
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Svistunova DM, Musinova YR, Polyakov VY, Sheval EV.
A simple method for the immunocytochemical detection of proteins inside nuclear structures that are inaccessible to specific antibodies.
J Histochem Cytochem. 2012 Feb;60(2):152-8 doi: 10.1369/0022155411429704
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Telford WG, Hawley T, Subach F, Verkhusha V, Hawley RG.
Flow cytometry of fluorescent proteins.
Methods. 2012 Jul;57(3):318-30 doi: 10.1016/j.ymeth.2012.01.003
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Watakabe A, Kato S, Kobayashi K, Takaji M, Nakagami Y, Sadakane O, Ohtsuka M, Hioki H, Kaneko T, Okuno H, Kawashima T, Bito H, Kitamura Y, Yamamori T.
Visualization of cortical projection neurons with retrograde TET-off lentiviral vector.
PLoS One. 2012;7(10):e46157 doi: 10.1371/journal.pone.0046157
pmid: 23071541
Zanet J, Jayo A, Plaza S, Millard T, Parsons M, Stramer B.
Fascin promotes filopodia formation independent of its role in actin bundling.
J Cell Biol. 2012 May 14;197(4):477-86 doi: 10.1083/jcb.201110135
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Zelmer A, Carroll P, Andreu N, Hagens K, Mahlo J, Redinger N, Robertson BD, Wiles S, Ward TH, Parish T, Ripoll J, Bancroft GJ, Schaible UE.
A new in vivo model to test anti-tuberculosis drugs using fluorescence imaging.
J Antimicrob Chemother. 2012 Aug;67(8):1948-60 doi: 10.1093/jac/dks161
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Anderson DD, Quintero CM, Stover PJ.
Identification of a de novo thymidylate biosynthesis pathway in mammalian mitochondria.
Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15163-8 doi: 10.1073/pnas.1103623108
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Askar SF, Ramkisoensing AA, Schalij MJ, Bingen BO, Swildens J, van der Laarse A, Atsma DE, de Vries AA, Ypey DL, Pijnappels DA.
Antiproliferative treatment of myofibroblasts prevents arrhythmias in vitro by limiting myofibroblast-induced depolarization.
Cardiovasc Res. 2011 May 1;90(2):295-304 doi: 10.1093/cvr/cvr011
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Brickley K, Stephenson FA.
Trafficking kinesin protein (TRAK)-mediated transport of mitochondria in axons of hippocampal neurons.
J Biol Chem. 2011 May 20;286(20):18079-92 doi: 10.1074/jbc.M111.236018
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Chang KT, Niescier RF, Min KT.
Mitochondrial matrix Ca²⁺ as an intrinsic signal regulating mitochondrial motility in axons.
Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15456-61 doi: 10.1073/pnas.1106862108
pmid: 21876166
Ciesek S, Westhaus S, Wicht M, Wappler I, Henschen S, Sarrazin C, Hamdi N, Abdelaziz AI, Strassburg CP, Wedemeyer H, Manns MP, Pietschmann T, von Hahn T.
Impact of intra- and interspecies variation of occludin on its function as coreceptor for authentic hepatitis C virus particles.
J Virol. 2011 Aug;85(15):7613-21 doi: 10.1128/JVI.00212-11
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Cornfine S, Himmel M, Kopp P, El Azzouzi K, Wiesner C, Krüger M, Rudel T, Linder S.
The kinesin KIF9 and reggie/flotillin proteins regulate matrix degradation by macrophage podosomes.
Mol Biol Cell. 2011 Jan 15;22(2):202-15 doi: 10.1091/mbc.E10-05-0394
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Currie JD, Stewman S, Schimizzi G, Slep KC, Ma A, Rogers SL.
The microtubule lattice and plus-end association of Drosophila Mini spindles is spatially regulated to fine-tune microtubule dynamics.
Mol Biol Cell. 2011 Nov;22(22):4343-61 doi: 10.1091/mbc.E11-06-0520
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Davis L, Maizels N.
DNA nicks promote efficient and safe targeted gene correction.
PLoS One. 2011;6(9):e23981 doi: 10.1371/journal.pone.0023981
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Diéguez-Hurtado R, Martín J, Martínez-Corral I, Martínez MD, Megías D, Olmeda D, Ortega S.
A Cre-reporter transgenic mouse expressing the far-red fluorescent protein Katushka.
Genesis. 2011 Jan;49(1):36-45 doi: 10.1002/dvg.20685
pmid: 21254335
Dower K, Rubins KH, Hensley LE, Connor JH.
Development of Vaccinia reporter viruses for rapid, high content analysis of viral function at all stages of gene expression.
Antiviral Res. 2011 Jul;91(1):72-80 doi: 10.1016/j.antiviral.2011.04.014
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Dragulescu-Andrasi A, Chan CT, De A, Massoud TF, Gambhir SS.
Bioluminescence resonance energy transfer (BRET) imaging of protein-protein interactions within deep tissues of living subjects.
Proc Natl Acad Sci U S A. 2011 Jul 19;108(29):12060-5 doi: 10.1073/pnas.1100923108
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Egami Y, Fukuda M, Araki N.
Rab35 regulates phagosome formation through recruitment of ACAP2 in macrophages during FcγR-mediated phagocytosis.
J Cell Sci. 2011 Nov 1;124(Pt 21):3557-67 doi: 10.1242/jcs.083881
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Figueiredo M, Lane S, Tang F, Liu BH, Hewinson J, Marina N, Kasymov V, Souslova EA, Chudakov DM, Gourine AV, Teschemacher AG, Kasparov S.
Optogenetic experimentation on astrocytes.
Exp Physiol. 2011 Jan;96(1):40-50 doi: 10.1113/expphysiol.2010.052597
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Francis SS, Sfakianos J, Lo B, Mellman I.
A hierarchy of signals regulates entry of membrane proteins into the ciliary membrane domain in epithelial cells.
J Cell Biol. 2011 Apr 4;193(1):219-33 doi: 10.1083/jcb.201009001
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Glass C, Singla DK.
MicroRNA-1 transfected embryonic stem cells enhance cardiac myocyte differentiation and inhibit apoptosis by modulating the PTEN/Akt pathway in the infarcted heart.
Am J Physiol Heart Circ Physiol. 2011 Nov;301(5):H2038-49 doi: 10.1152/ajpheart.00271.2011
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Goto S, Mano S, Nakamori C, Nishimura M.
Arabidopsis ABERRANT PEROXISOME MORPHOLOGY9 is a peroxin that recruits the PEX1-PEX6 complex to peroxisomes.
Plant Cell. 2011 Apr;23(4):1573-87 doi: 10.1105/tpc.110.080770
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Hayashi K, Suzuki A, Hirai S, Kurihara Y, Hoogenraad CC, Ohno S.
Maintenance of dendritic spine morphology by partitioning-defective 1b through regulation of microtubule growth.
J Neurosci. 2011 Aug 24;31(34):12094-103 doi: 10.1523/JNEUROSCI.0751-11.2011
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Herron CR, Lowery AM, Hollister PR, Reynolds AB, Vincent PA.
p120 regulates endothelial permeability independently of its NH2 terminus and Rho binding.
Am J Physiol Heart Circ Physiol. 2011 Jan;300(1):H36-48 doi: 10.1152/ajpheart.00812.2010
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Hojman P, Spanggaard I, Olsen CH, Gehl J, Gissel H.
Calcium electrotransfer for termination of transgene expression in muscle.
Hum Gene Ther. 2011 Jun;22(6):753-60 doi: 10.1089/hum.2010.209
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Lee MY, Song YS, Ryu KH.
Development of infectious transcripts from full-length and GFP-tagged cDNA clones of Pepper mottle virus and stable systemic expression of GFP in tobacco and pepper.
Virus Res. 2011 Feb;155(2):487-94 doi: 10.1016/j.virusres.2010.12.004
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Lombardi ML, Jaalouk DE, Shanahan CM, Burke B, Roux KJ, Lammerding J.
The interaction between nesprins and sun proteins at the nuclear envelope is critical for force transmission between the nucleus and cytoskeleton.
J Biol Chem. 2011 Jul 29;286(30):26743-53 doi: 10.1074/jbc.M111.233700
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Love NR, Thuret R, Chen Y, Ishibashi S, Sabherwal N, Paredes R, Alves-Silva J, Dorey K, Noble AM, Guille MJ, Sasai Y, Papalopulu N, Amaya E.
pTransgenesis: a cross-species, modular transgenesis resource.
Development. 2011 Dec;138(24):5451-8 doi: 10.1242/dev.066498
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Luker KE, Mihalko LA, Schmidt BT, Lewin SA, Ray P, Shcherbo D, Chudakov DM, Luker GD.
In vivo imaging of ligand receptor binding with Gaussia luciferase complementation.
Nat Med. 2011 Dec 4;18(1):172-7 doi: 10.1038/nm.2590
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Luo H, Yang J, Jin H, Huang C, Fu J, Yang F, Gong H, Zeng S, Luo Q, Zhang Z.
Tetrameric far-red fluorescent protein as a scaffold to assemble an octavalent peptide nanoprobe for enhanced tumor targeting and intracellular uptake in vivo.
FASEB J. 2011 Jun;25(6):1865-73 doi: 10.1096/fj.10-174318
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Mader CC, Oser M, Magalhaes MA, Bravo-Cordero JJ, Condeelis J, Koleske AJ, Gil-Henn H.
An EGFR-Src-Arg-cortactin pathway mediates functional maturation of invadopodia and breast cancer cell invasion.
Cancer Res. 2011 Mar 1;71(5):1730-41 doi: 10.1158/0008-5472.CAN-10-1432
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Maurya AK, Tan H, Souren M, Wang X, Wittbrodt J, Ingham PW.
Integration of Hedgehog and BMP signalling by the engrailed2a gene in the zebrafish myotome.
Development. 2011 Feb;138(4):755-65 doi: 10.1242/dev.062521
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McJunkin K, Mazurek A, Premsrirut PK, Zuber J, Dow LE, Simon J, Stillman B, Lowe SW.
Reversible suppression of an essential gene in adult mice using transgenic RNA interference.
Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):7113-8
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Meerbrey KL, Hu G, Kessler JD, Roarty K, Li MZ, Fang JE, Herschkowitz JI, Burrows AE, Ciccia A, Sun T, Schmitt EM, Bernardi RJ, Fu X, Bland CS, Cooper TA, Schiff R, Rosen JM, Westbrook TF, Elledge SJ.
The pINDUCER lentiviral toolkit for inducible RNA interference in vitro and in vivo.
Proc Natl Acad Sci U S A. 2011 Mar 1;108(9):3665-70 doi: 10.1073/pnas.1019736108
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Mutoh H, Perron A, Akemann W, Iwamoto Y, Knöpfel T.
Optogenetic monitoring of membrane potentials.
Exp Physiol. 2011 Jan;96(1):13-8 doi: 10.1113/expphysiol.2010.053942
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Nadell CD, Bassler BL.
A fitness trade-off between local competition and dispersal in Vibrio cholerae biofilms.
Proc Natl Acad Sci U S A. 2011 Aug 23;108(34):14181-5 doi: 10.1073/pnas.1111147108
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Naoghare PK, Tak YK, Kim MJ, Han E, Song JM.
Knock-down of argonaute 2 (AGO2) induces apoptosis in myeloid leukaemia cells and inhibits siRNA-mediated silencing of transfected oncogenes in HEK-293 cells.
Basic Clin Pharmacol Toxicol. 2011 Oct;109(4):274-82 doi: 10.1111/j.1742-7843.2011.00716.x
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Noh SM, Ueti MW, Palmer GH, Munderloh UG, Felsheim RF, Brayton KA.
Stability and tick transmission phenotype of gfp-transformed Anaplasma marginale through a complete in vivo infection cycle.
Appl Environ Microbiol. 2011 Jan;77(1):330-4 doi: 10.1128/AEM.02096-10
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Orth JD, Kohler RH, Foijer F, Sorger PK, Weissleder R, Mitchison TJ.
Analysis of mitosis and antimitotic drug responses in tumors by in vivo microscopy and single-cell pharmacodynamics.
Cancer Res. 2011 Jul 1;71(13):4608-16 doi: 10.1158/0008-5472.CAN-11-0412
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Pavlyukov MS, Antipova NV, Balashova MV, Vinogradova TV, Kopantzev EP, Shakhparonov MI.
Survivin monomer plays an essential role in apoptosis regulation.
J Biol Chem. 2011 Jul 1;286(26):23296-307 doi: 10.1074/jbc.M111.237586
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Pletneva NV, Pletnev VZ, Shemiakina II, Chudakov DM, Artemyev I, Wlodawer A, Dauter Z, Pletnev S.
Crystallographic study of red fluorescent protein eqFP578 and its far-red variant Katushka reveals opposite pH-induced isomerization of chromophore.
Protein Sci. 2011 Jul;20(7):1265-74 doi: 10.1002/pro.654
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Ragàs X, Cooper LP, White JH, Nonell S, Flors C.
Quantification of photosensitized singlet oxygen production by a fluorescent protein.
Chemphyschem. 2011 Jan 17;12(1):161-5 doi: 10.1002/cphc.201000919
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Rondanino C, Poland PA, Kinlough CL, Li H, Rbaibi Y, Myerburg MM, Al-bataineh MM, Kashlan OB, Pastor-Soler NM, Hallows KR, Weisz OA, Apodaca G, Hughey RP.
Galectin-7 modulates the length of the primary cilia and wound repair in polarized kidney epithelial cells.
Am J Physiol Renal Physiol. 2011 Sep;301(3):F622-33 doi: 10.1152/ajprenal.00134.2011
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Saito C, Uemura T, Awai C, Ueda T, Abe H, Nakano A.
Qualitative difference between "bulb" membranes and other vacuolar membranes.
Plant Signal Behav. 2011 Dec;6(12):1914-7
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Schoggins JW, Wilson SJ, Panis M, Murphy MY, Jones CT, Bieniasz P, Rice CM.
A diverse range of gene products are effectors of the type I interferon antiviral response.
Nature. 2011 Apr 28;472(7344):481-5 doi: 10.1038/nature09907
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Snaith HA, Thompson J, Yates JR 3rd, Sawin KE.
Characterization of Mug33 reveals complementary roles for actin cable-dependent transport and exocyst regulators in fission yeast exocytosis.
J Cell Sci. 2011 Jul 1;124(Pt 13):2187-99 doi: 10.1242/jcs.084038
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Subach OM, Cranfill PJ, Davidson MW, Verkhusha VV.
An enhanced monomeric blue fluorescent protein with the high chemical stability of the chromophore.
PLoS One. 2011;6(12):e28674
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Tak YK, Naoghare PK, Han E, Song JM.
VEGF inhibitor (Iressa) arrests histone deacetylase expression: single-cell cotransfection imaging cytometry for multi-target-multi-drug analysis.
J Cell Physiol. 2011 Aug;226(8):2115-22 doi: 10.1002/jcp.22540
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Thierfelder S, Ostermann K, Göbel A, Rödel G.
Vectors for glucose-dependent protein expression in Saccharomyces cerevisiae.
Appl Biochem Biotechnol. 2011 Apr;163(8):954-64 doi: 10.1007/s12010-010-9099-5
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Verreault M, Strutt D, Masin D, Fink D, Gill R, Bally MB.
Development of glioblastoma cell lines expressing red fluorescence for non-invasive live imaging of intracranial tumors.
Anticancer Res. 2011 Jun;31(6):2161-71
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Walther KA, Papke B, Sinn MB, Michel K, Kinkhabwala A.
Precise measurement of protein interacting fractions with fluorescence lifetime imaging microscopy.
Mol Biosyst. 2011 Feb;7(2):322-36 doi: 10.1039/c0mb00132e
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Wang L, Toomey NL, Diaz LA, Walker G, Ramos JC, Barber GN, Ning S.
Oncogenic IRFs provide a survival advantage for Epstein-Barr virus- or human T-cell leukemia virus type 1-transformed cells through induction of BIC expression.
J Virol. 2011 Aug;85(16):8328-37 doi: 10.1128/JVI.00570-11
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Wang Q, Byrnes LJ, Shui B, Röhrig UF, Singh A, Chudakov DM, Lukyanov S, Zipfel WR, Kotlikoff MI, Sondermann H.
Molecular mechanism of a green-shifted, pH-dependent red fluorescent protein mKate variant.
PLoS One. 2011;6(8):e23513 doi: 10.1371/journal.pone.0023513
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Watson DS, Platt VM, Cao L, Venditto VJ, Szoka FC Jr.
Antibody response to polyhistidine-tagged peptide and protein antigens attached to liposomes via lipid-linked nitrilotriacetic acid in mice.
Clin Vaccine Immunol. 2011 Feb;18(2):289-97 doi: 10.1128/CVI.00425-10
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Werner ME, Hwang P, Huisman F, Taborek P, Yu CC, Mitchell BJ.
Actin and microtubules drive differential aspects of planar cell polarity in multiciliated cells.
J Cell Biol. 2011 Oct 3;195(1):19-26 doi: 10.1083/jcb.201106110
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Bedoya L, Martínez F, Rubio L, Daròs JA.
Simultaneous equimolar expression of multiple proteins in plants from a disarmed potyvirus vector.
J Biotechnol. 2010 Oct 15;150(2):268-75 doi: 10.1016/j.jbiotec.2010.08.006
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Berepiki A, Lichius A, Shoji JY, Tilsner J, Read ND.
F-actin dynamics in Neurospora crassa.
Eukaryot Cell. 2010 Apr;9(4):547-57 doi: 10.1128/EC.00253-09
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Destaing O, Planus E, Bouvard D, Oddou C, Badowski C, Bossy V, Raducanu A, Fourcade B, Albiges-Rizo C, Block MR.
beta1A integrin is a master regulator of invadosome organization and function.
Mol Biol Cell. 2010 Dec;21(23):4108-19 doi: 10.1091/mbc.E10-07-0580
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Dudgeon DD, Shinde S, Hua Y, Shun TY, Lazo JS, Strock CJ, Giuliano KA, Taylor DL, Johnston PA, Johnston PA.
Implementation of a 220,000-compound HCS campaign to identify disruptors of the interaction between p53 and hDM2 and characterization of the confirmed hits.
J Biomol Screen. 2010 Aug;15(7):766-82 doi: 10.1177/1087057110375304
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Dudgeon DD, Shinde SN, Shun TY, Lazo JS, Strock CJ, Giuliano KA, Taylor DL, Johnston PA, Johnston PA.
Characterization and optimization of a novel protein-protein interaction biosensor high-content screening assay to identify disruptors of the interactions between p53 and hDM2.
Assay Drug Dev Technol. 2010 Aug;8(4):437-58 doi: 10.1089/adt.2010.0281
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Erdel F, Schubert T, Marth C, Längst G, Rippe K.
Human ISWI chromatin-remodeling complexes sample nucleosomes via transient binding reactions and become immobilized at active sites.
Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19873-8 doi: 10.1073/pnas.1003438107
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Fantin A, Vieira JM, Gestri G, Denti L, Schwarz Q, Prykhozhij S, Peri F, Wilson SW, Ruhrberg C.
Tissue macrophages act as cellular chaperones for vascular anastomosis downstream of VEGF-mediated endothelial tip cell induction.
Blood. 2010 Aug 5;116(5):829-40 doi: 10.1182/blood-2009-12-257832
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Felsheim RF, Chavez AS, Palmer GH, Crosby L, Barbet AF, Kurtti TJ, Munderloh UG.
Transformation of Anaplasma marginale.
Vet Parasitol. 2010 Feb 10;167(2-4):167-74 doi: 10.1016/j.vetpar.2009.09.018
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Friedrich MW, Aramuni G, Mank M, Mackinnon JA, Griesbeck O.
Imaging CREB activation in living cells.
J Biol Chem. 2010 Jul 23;285(30):23285-95 doi: 10.1074/jbc.M110.124545
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Fruhwirth GO, Ameer-Beg S, Cook R, Watson T, Ng T, Festy F.
Fluorescence lifetime endoscopy using TCSPC for the measurement of FRET in live cells.
Opt Express. 2010 May 24;18(11):11148-58 doi: 10.1364/OE.18.011148
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Fujimoto M, Arimura S, Ueda T, Takanashi H, Hayashi Y, Nakano A, Tsutsumi N.
Arabidopsis dynamin-related proteins DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis.
Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):6094-9 doi: 10.1073/pnas.0913562107
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Gothelf A, Eriksen J, Hojman P, Gehl J.
Duration and level of transgene expression after gene electrotransfer to skin in mice.
Gene Ther. 2010 Jul;17(7):839-45 doi: 10.1038/gt.2010.35
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Izumiya M, Okamoto K, Tsuchiya N, Nakagama H.
Functional screening using a microRNA virus library and microarrays: a new high-throughput assay to identify tumor-suppressive microRNAs.
Carcinogenesis. 2010 Aug;31(8):1354-9 doi: 10.1093/carcin/bgq112
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Kohaar I, Ploss A, Korol E, Mu K, Schoggins JW, O'Brien TR, Rice CM, Prokunina-Olsson L.
Splicing diversity of the human OCLN gene and its biological significance for hepatitis C virus entry.
J Virol. 2010 Jul;84(14):6987-94 doi: 10.1128/JVI.00196-10
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Löw K, Blesch A, Herrmann J, Tuszynski MH.
A dual promoter lentiviral vector for the in vivo evaluation of gene therapeutic approaches to axon regeneration after spinal cord injury.
Gene Ther. 2010 May;17(5):577-91 doi: 10.1038/gt.2010.14
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Li ZH, Dulyaninova NG, House RP, Almo SC, Bresnick AR.
S100A4 regulates macrophage chemotaxis.
Mol Biol Cell. 2010 Aug 1;21(15):2598-610 doi: 10.1091/mbc.E09-07-0609
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Lin LT, Noyce RS, Pham TN, Wilson JA, Sisson GR, Michalak TI, Mossman KL, Richardson CD.
Replication of subgenomic hepatitis C virus replicons in mouse fibroblasts is facilitated by deletion of interferon regulatory factor 3 and expression of liver-specific microRNA 122.
J Virol. 2010 Sep;84(18):9170-80 doi: 10.1128/JVI.00559-10
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Liu C, Cheng Q, Nguyen T, Bonanno JA.
Knockdown of NBCe1 in vivo compromises the corneal endothelial pump.
Invest Ophthalmol Vis Sci. 2010 Oct;51(10):5190-7 doi: 10.1167/iovs.10-5257
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Nakamura S, Mano S, Tanaka Y, Ohnishi M, Nakamori C, Araki M, Niwa T, Nishimura M, Kaminaka H, Nakagawa T, Sato Y, Ishiguro S.
Gateway binary vectors with the bialaphos resistance gene, bar, as a selection marker for plant transformation.
Biosci Biotechnol Biochem. 2010;74(6):1315-9
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Niino Y, Hotta K, Oka K.
Blue fluorescent cGMP sensor for multiparameter fluorescence imaging.
PLoS One. 2010 Feb 11;5(2):e9164 doi: 10.1371/journal.pone.0009164
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Norris MH, Kang Y, Wilcox B, Hoang TT.
Stable, site-specific fluorescent tagging constructs optimized for burkholderia species.
Appl Environ Microbiol. 2010 Nov;76(22):7635-40 doi: 10.1128/AEM.01188-10
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Nunez-Cruz S, Connolly DC, Scholler N.
An orthotopic model of serous ovarian cancer in immunocompetent mice for in vivo tumor imaging and monitoring of tumor immune responses.
J Vis Exp. 2010 Nov 28;(45) doi: 10.3791/2146
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Ohashi Y, Munro S.
Membrane delivery to the yeast autophagosome from the Golgi-endosomal system.
Mol Biol Cell. 2010 Nov 15;21(22):3998-4008 doi: 10.1091/mbc.E10-05-0457
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Piatkevich KD, Hulit J, Subach OM, Wu B, Abdulla A, Segall JE, Verkhusha VV.
Monomeric red fluorescent proteins with a large Stokes shift.
Proc Natl Acad Sci U S A. 2010 Mar 23;107(12):5369-74 doi: 10.1073/pnas.0914365107
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Ro S, Park C, Jin J, Zheng H, Blair PJ, Redelman D, Ward SM, Yan W, Sanders KM.
A model to study the phenotypic changes of interstitial cells of Cajal in gastrointestinal diseases.
Gastroenterology. 2010 Mar;138(3):1068-78.e1-2 doi: 10.1053/j.gastro.2009.11.007
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Rusanov AL, Ivashina TV, Vinokurov LM, Fiks II, Orlova AG, Turchin IV, Meerovich IG, Zherdeva VV, Savitsky AP.
Lifetime imaging of FRET between red fluorescent proteins.
J Biophotonics. 2010 Dec;3(12):774-83 doi: 10.1002/jbio.201000065
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Shalek AK, Robinson JT, Karp ES, Lee JS, Ahn DR, Yoon MH, Sutton A, Jorgolli M, Gertner RS, Gujral TS, MacBeath G, Yang EG, Park H.
Vertical silicon nanowires as a universal platform for delivering biomolecules into living cells.
Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):1870-5 doi: 10.1073/pnas.0909350107
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Shcherbo D, Shemiakina II, Ryabova AV, Luker KE, Schmidt BT, Souslova EA, Gorodnicheva TV, Strukova L, Shidlovskiy KM, Britanova OV, Zaraisky AG, Lukyanov KA, Loschenov VB, Luker GD, Chudakov DM.
Near-infrared fluorescent proteins.
Nat Methods. 2010 Oct;7(10):827-9 doi: 10.1038/nmeth.1501
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Slanina H, König A, Hebling S, Hauck CR, Frosch M, Schubert-Unkmeir A.
Entry of Neisseria meningitidis into mammalian cells requires the Src family protein tyrosine kinases.
Infect Immun. 2010 May;78(5):1905-14 doi: 10.1128/IAI.01267-09
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Subach FV, Patterson GH, Renz M, Lippincott-Schwartz J, Verkhusha VV.
Bright monomeric photoactivatable red fluorescent protein for two-color super-resolution sptPALM of live cells.
J Am Chem Soc. 2010 May 12;132(18):6481-91 doi: 10.1021/ja100906g
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Subach OM, Malashkevich VN, Zencheck WD, Morozova KS, Piatkevich KD, Almo SC, Verkhusha VV.
Structural characterization of acylimine-containing blue and red chromophores in mTagBFP and TagRFP fluorescent proteins.
Chem Biol. 2010 Apr 23;17(4):333-41 doi: 10.1016/j.chembiol.2010.03.005
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Suenaga T, Satoh T, Somboonthum P, Kawaguchi Y, Mori Y, Arase H.
Myelin-associated glycoprotein mediates membrane fusion and entry of neurotropic herpesviruses.
Proc Natl Acad Sci U S A. 2010 Jan 12;107(2):866-71 doi: 10.1073/pnas.0913351107
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Swan LE, Tomasini L, Pirruccello M, Lunardi J, De Camilli P.
Two closely related endocytic proteins that share a common OCRL-binding motif with APPL1.
Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3511-6 doi: 10.1073/pnas.0914658107
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Torii T, Miyamoto Y, Sanbe A, Nishimura K, Yamauchi J, Tanoue A.
Cytohesin-2/ARNO, through its interaction with focal adhesion adaptor protein paxillin, regulates preadipocyte migration via the downstream activation of Arf6.
J Biol Chem. 2010 Jul 30;285(31):24270-81 doi: 10.1074/jbc.M110.125658
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Veeraraghavalu K, Choi SH, Zhang X, Sisodia SS.
Presenilin 1 mutants impair the self-renewal and differentiation of adult murine subventricular zone-neuronal progenitors via cell-autonomous mechanisms involving notch signaling.
J Neurosci. 2010 May 19;30(20):6903-15 doi: 10.1523/JNEUROSCI.0527-10.2010
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Wang YY, Li Z, Jiao D, Zhang Z, Shao X, Yuan J, Yu P.
RNA interference reveals a requirement for both p18INK4c and p27Kip1 in B lymphopoiesis.
J Mol Cell Biol. 2010 Aug;2(4):209-16 doi: 10.1093/jmcb/mjq013
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Ai J, Wang Y, Dar JA, Liu J, Liu L, Nelson JB, Wang Z.
HDAC6 Regulates Androgen Receptor Hypersensitivity and Nuclear Localization via Modulating Hsp90 Acetylation in Castration-Resistant Prostate Cancer.
Mol Endocrinol. 2009 Dec;23(12):1963-1972 doi: 10.1210/me.2009-0188
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al-Haj L, Al-Ahmadi W, Al-Saif M, Demirkaya O, Khabar KS.
Cloning-free regulated monitoring of reporter and gene expression.
BMC Mol Biol. 2009 Mar 8;10:20 doi: 10.1186/1471-2199-10-20
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Anderson DD, Stover PJ.
SHMT1 and SHMT2 are functionally redundant in nuclear De novo thymidylate biosynthesis.
PLoS One. 2009 Jun 9;4(6):e5839 doi: 10.1371/journal.pone.0005839
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Bohnacker T, Marone R, Collmann E, Calvez R, Hirsch E, Wymann MP.
PI3Kgamma adaptor subunits define coupling to degranulation and cell motility by distinct PtdIns(3,4,5)P3 pools in mast cells.
Sci Signal. 2009 Jun 9;2(74):ra27 doi: 10.1126/scisignal.2000259
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Bulankina AV, Deggerich A, Wenzel D, Mutenda K, Wittmann JG, Rudolph MG, Burger KN, Honing S.
TIP47 functions in the biogenesis of lipid droplets.
J Cell Biol. 2009 May 18;185(4):641-55 doi: 10.1083/jcb.200812042
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Cai CQ, Doyon Y, Ainley WM, Miller JC, Dekelver RC, Moehle EA, Rock JM, Lee YL, Garrison R, Schulenberg L, Blue R, Worden A, Baker L, Faraji F, Zhang L, Holmes MC, Rebar EJ, Collingwood TN, Rubin-Wilson B, Gregory PD, Urnov FD, Petolino JF.
Targeted transgene integration in plant cells using designed zinc finger nucleases.
Plant Mol Biol. 2009 Apr;69(6):699-709 doi: 10.1007/s11103-008-9449-7
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Chakraborty C, Hsu CH, Wen ZH, Lin CS.
Recent Advances of Fluorescent Technologies for Drug Discovery and Development.
Current Pharmaceutical Design. 2009 Oct;15(30):3552-70(19) http://www.ingentaconnect.com
Chu J, Zhang Z, Zheng Y, Yang J, Qin L, Lu J, Huang ZL, Zeng S, Luo Q.
A novel far-red bimolecular fluorescence complementation system that allows for efficient visualization of protein interactions under physiological conditions.
Biosens Bioelectron. 2009 Sep 15;25(1):234-9 doi: 10.1016/j.bios.2009.06.008
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Costantini JL, Cheung SM, Hou S, Li H, Kung SK, Johnston JB, Wilkins JA, Gibson SB, Marshall AJ.
TAPP2 links phosphoinositide 3-kinase signaling to B-cell adhesion through interaction with the cytoskeletal protein utrophin: expression of a novel cell adhesion-promoting complex in B-cell leukemia.
Blood. 2009 Nov 19;114(21):4703-12 doi: 10.1182/blood-2009-03-213058
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Doebele RC, Schulze-Hoepfner FT, Hong J, Chlenski A, Zeitlin BD, Goel K, Gomes S, Liu Y, Abe MK, Nor JE, Lingen MW, Rosner MR.
A novel interplay between Epac/Rap1 and mitogen-activated protein kinase kinase 5/extracellular signal-regulated kinase 5 (MEK5/ERK5) regulates thrombospondin to control angiogenesis.
Blood. 2009 Nov 12;114(20):4592-600 doi: 10.1182/blood-2009-04-217042
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Drobizhev M, Tillo S, Makarov NS, Hughes TE, Rebane A.
Absolute two-photon absorption spectra and two-photon brightness of orange and red fluorescent proteins.
J Phys Chem B. 2009 Jan 29;113(4):855-9 doi: 10.1021/jp8087379
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Elliott AM, Al-Hajj MA.
ABCB8 mediates doxorubicin resistance in melanoma cells by protecting the mitochondrial genome.
Mol Cancer Res. 2009 Jan;7(1):79-87 doi: 10.1158/1541-7786.MCR-08-0235
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Endo R, Saito T, Asada A, Kawahara H, Ohshima T, Hisanaga S.
Commitment of 1-methyl-4-phenylpyrinidinium ion-induced neuronal cell death by proteasome-mediated degradation of p35 cyclin-dependent kinase 5 activator.
J Biol Chem. 2009 Sep 18;284(38):26029-39 doi: 10.1074/jbc.M109.026443
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Ferguson HE, Kulkarni A, Lehmann GM, Garcia-Bates TM, Thatcher TH, Huxlin KR, Phipps RP, Sime PJ.
Electrophilic peroxisome proliferator-activated receptor-gamma ligands have potent antifibrotic effects in human lung fibroblasts.
Am J Respir Cell Mol Biol. 2009 Dec;41(6):722-30 doi: 10.1165/rcmb.2009-0006OC
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Froscio SM, Cannon E, Lau HM, Humpage AR.
Limited uptake of the cyanobacterial toxin cylindrospermopsin by Vero cells.
Toxicon. 2009 Nov;54(6):862-8 doi: 10.1016/j.toxicon.2009.06.019
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Gao Q, Nie P, Thompson KD, Adams A, Wang T, Secombes CJ, Zou J.
The search for the IFN-gamma receptor in fish: Functional and expression analysis of putative binding and signalling chains in rainbow trout Oncorhynchus mykiss.
Dev Comp Immunol. 2009 Aug;33(8):920-31 doi: 10.1016/j.dci.2009.03.001
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Gautam SG, Perron A, Mutoh H, Knopfel T.
Exploration of fluorescent protein voltage probes based on circularly permuted fluorescent proteins.
Front Neuroengineering. 2009;2:14 doi: 10.3389/neuro.16.014.2009
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Goedhart J, Gadella TWJ Jr
Fluorescence resonance energy transfer imaging of PKC signalling in living cells using genetically encoded fluorescent probes.
J R Soc Interface. 2009;6(Suppl_1):S27-34 www.ncbi.nlm.nih.gov
Gogvadze E, Stukacheva E, Buzdin A, Sverdlov E.
Human-specific modulation of transcriptional activity provided by endogenous retroviral insertions.
J Virol. 2009 Jun;83(12):6098-105 doi: 10.1128/JVI.00123-09
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Heeroma JH, Henneberger C, Rajakulendran S, Hanna MG, Schorge S, Kullmann DM.
Episodic ataxia type 1 mutations differentially affect neuronal excitability and transmitter release.
Dis Model Mech. 2009 Nov-Dec;2(11-12):612-9 doi: 10.1242/dmm.003582
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Hojman P, Eriksen J, Gehl J.
In Vivo Imaging of Far-red Fluorescent Proteins after DNA Electrotransfer to Muscle Tissue.
Biol Proced Online. 2009 Apr 10;11:253-62 doi: 10.1007/s12575-009-9005-0
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Hollis ER 2nd, Jamshidi P, Low K, Blesch A, Tuszynski MH.
Induction of corticospinal regeneration by lentiviral trkB-induced Erk activation.
Proc Natl Acad Sci U S A. 2009 Apr 28;106(17):7215-20 doi: 10.1073/pnas.0810624106
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Jabbour M, Campbell EM, Fares H, Lybarger L.
Discrete domains of MARCH1 mediate its localization, functional interactions, and posttranscriptional control of expression.
J Immunol. 2009 Nov 15;183(10):6500-12 doi: 10.4049/jimmunol.0901521
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Jagasia R, Steib K, Englberger E, Herold S, Faus-Kessler T, Saxe M, Gage FH, Song H, Lie DC.
GABA-cAMP response element-binding protein signaling regulates maturation and survival of newly generated neurons in the adult hippocampus.
J Neurosci. 2009 Jun 24;29(25):7966-77 doi: 10.1523/JNEUROSCI.1054-09.2009
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Jiang Q, Feng MG, Mo YY.
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BMC Cancer. 2009 Jun 18;9:194 doi: 10.1186/1471-2407-9-194
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Jubelin G, Chavez CV, Taieb F, Banfield MJ, Samba-Louaka A, Nobe R, Nougayrede JP, Zumbihl R, Givaudan A, Escoubas JM, Oswald E.
Cycle inhibiting factors (CIFs) are a growing family of functional cyclomodulins present in invertebrate and mammal bacterial pathogens.
PLoS One. 2009;4(3):e4855 doi: 10.1371/journal.pone.0004855
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Kawashima T, Okuno H, Nonaka M, Adachi-Morishima A, Kyo N, Okamura M, Takemoto-Kimura S, Worley PF, Bito H.
Synaptic activity-responsive element in the Arc/Arg3.1 promoter essential for synapse-to-nucleus signaling in activated neurons.
Proc Natl Acad Sci U S A. 2009 Jan 6;106(1):316-21 doi: 10.1073/pnas.0806518106
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Major signaling pathways in migrating neuroblasts.
Front Mol Neurosci. 2009;2:7 doi: 10.3389/neuro.02.007.2009
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Kobrinsky E, Abrahimi P, Duong SQ, Thomas S, Harry JB, Patel C, Lao QZ, Soldatov NM.
Effect of Ca(v)beta subunits on structural organization of Ca(v)1.2 calcium channels.
PLoS ONE. 2009 May 18;4(5):e5587 doi: 10.1371/journal.pone.0005587
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Characterizing host receptor recognition by individual bacterial pathogens.
Methods Mol Biol. 2009;470:57-65 doi: 10.1007/978-1-59745-204-5_5
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Coronin 2A regulates a subset of focal-adhesion-turnover events through the cofilin pathway.
J Cell Sci. 2009 Sep 1;122(Pt 17):3061-9 doi: 10.1242/jcs.051482
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Martin K, Kopperud K, Chakrabarty R, Banerjee R, Brooks R, Goodin MM.
Transient expression in Nicotiana benthamiana fluorescent marker lines provides enhanced definition of protein localization, movement and interactions in planta.
Plant J. 2009 Jul;59(1):150-62 doi: 10.1111/j.1365-313X.2009.03850.x
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Interstitial cells of Cajal in the gut: what makes them tick?
J Physiol. 2009 Oct 15;587(Pt 20):4765 doi: 10.1113/jphysiol.2009.181453
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Analysis of promoter binding proteins of Ebp1 that is inhibitor protein of influenza virus RNA polymerase
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Live-imaging fluorescent proteins in mouse embryos: multi-dimensional, multi-spectral perspectives.
Trends Biotechnol. 2009 May;27(5):266-76 doi: 10.1016/j.tibtech.2009.02.006
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Oser M, Yamaguchi H, Mader CC, Bravo-Cordero JJ, Arias M, Chen X, Desmarais V, van Rheenen J, Koleske AJ, Condeelis J.
Cortactin regulates cofilin and N-WASp activities to control the stages of invadopodium assembly and maturation.
J Cell Biol. 2009 Aug 24;186(4):571-87 doi: 10.1083/jcb.200812176
pmid: 19704022
Oswald C, Krause-Buchholz U, Rodel G.
Knockdown of human COX17 affects assembly and supramolecular organization of cytochrome c oxidase.
J Mol Biol. 2009 Jun 12;389(3):470-9 doi: 10.1016/j.jmb.2009.04.034
pmid: 19393246
Pletnev S, Gurskaya NG, Pletneva NV, Lukyanov KA, Chudakov DM, Martynov VI, Popov VO, Kovalchuk MV, Wlodawer A, Dauter Z, Pletnev V.
Structural basis for phototoxicity of the genetically encoded photosensitizer KillerRed.
J Biol Chem. 2009 Nov 13;284(46):32028-39 doi: 10.1074/jbc.M109.054973
pmid: 19737938
Prescott M.
Genetically Encoded Fluorescent Probes: Some Properties and Applications in Life Sciences.
In: Fluorescence Applications in Biotechnology and Life Sciences. By Ewa M. Goldys. ISBN: 978-0-470-08370-3. 2009; http://books.google.com
Sachdeva M, Zhu S, Wu F, Wu H, Walia V, Kumar S, Elble R, Watabe K, Mo YY.
p53 represses c-Myc through induction of the tumor suppressor miR-145.
Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3207-12 doi: 10.1073/pnas.0808042106
pmid: 19202062
Saleh A, Shan L, Halayko AJ, Kung S, Gounni AS.
Critical role for STAT3 in IL-17A-mediated CCL11 expression in human airway smooth muscle cells.
J Immunol. 2009 Mar 15;182(6):3357-65 doi: 10.4049/jimmunol.0801882
pmid: 19265112
Samarkina ON, Popova AG, Gvozdik EY, Chkalina AV, Zvyagin IV, Rylova YV, Rudenko NV, Lusta KA, Kelmanson IV, Gorokhovatsky AY, Vinokurov LM.
Universal and rapid method for purification of GFP-like proteins by the ethanol extraction.
Protein Expr Purif. 2009 May;65(1):108-13 doi: 10.1016/j.pep.2008.11.008
pmid: 19084068
Schetelig MF, Scolari F, Handler AM, Kittelmann S, Gasperi G, Wimmer EA.
Site-specific recombination for the modification of transgenic strains of the Mediterranean fruit fly Ceratitis capitata.
Proc Natl Acad Sci U S A. 2009 Oct 27;106(43):18171-6 doi: 10.1073/pnas.0907264106
pmid: 19828439
Schmitz R, Hansmann ML, Bohle V, Martin-Subero JI, Hartmann S, Mechtersheimer G, Klapper W, Vater I, Giefing M, Gesk S, Stanelle J, Siebert R, Kuppers R.
TNFAIP3 (A20) is a tumor suppressor gene in Hodgkin lymphoma and primary mediastinal B cell lymphoma.
J Exp Med. 2009 May 11;206(5):981-9 doi: 10.1084/jem.20090528
pmid: 19380639
Shah SN, Eckert KA.
Human postmeiotic segregation 2 exhibits biased repair at tetranucleotide microsatellite sequences.
Cancer Res. 2009 Feb 1;69(3):1143-9 doi: 10.1158/0008-5472.CAN-08-3499
pmid: 19155293
Shcherbo D, Murphy CS, Ermakova GV, Solovieva EA, Chepurnykh TV, Shcheglov AS, Verkhusha VV, Pletnev VZ, Hazelwood KL, Roche PM, Lukyanov S, Zaraisky AG, Davidson MW, Chudakov DM.
Far-red fluorescent tags for protein imaging in living tissues.
Biochem J. 2009 Mar 15;418(3):567-74 doi: 10.1042/BJ20081949
pmid: 19143658
Shcherbo D, Souslova EA, Goedhart J, Chepurnykh TV, Gaintzeva A, Shemiakina II, Gadella TW, Lukyanov S, Chudakov DM.
Practical and reliable FRET/FLIM pair of fluorescent proteins.
BMC Biotechnol. 2009 Mar 25;9:24 doi: 10.1186/1472-6750-9-24
pmid: 19321010
Shibata T, Tanaka T, Shimizu K, Hayakawa S, Kuroda K.
Immunofluorescence imaging of the influenza virus M1 protein is dependent on the fixation method.
J Virol Methods. 2009 Mar;156(1-2):162-5 doi: 10.1016/j.jviromet.2008.10.020
pmid: 19027795
Shu X, Royant A, Lin MZ, Aguilera TA, Lev-Ram V, Steinbach PA, Tsien RY.
Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome.
Science. 2009 May 8;324(5928):804-7 doi: 10.1126/science.1168683
pmid: 19423828
Sugino H, Ozaki K, Shirasaki Y, Arakawa T, Shoji S, Funatsu T.
On-chip microfluidic sorting with fluorescence spectrum detection and multiway separation.
Lab Chip. 2009 May 7;9(9):1254-60 doi: 10.1039/b815765k
pmid: 19370245
Sun W, Li Y, Chen L, Chen H, You F, Zhou X, Zhou Y, Zhai Z, Chen D, Jiang Z.
ERIS, an endoplasmic reticulum IFN stimulator, activates innate immune signaling through dimerization.
Proc Natl Acad Sci U S A. 2009 May 26;106(21):8653-8 doi: 10.1073/pnas.0900850106
pmid: 19433799
Sun Z, Juriani A, Meininger GA, Meissner KE.
Probing cell surface interactions using atomic force microscope cantilevers functionalized for quantum dot-enabled Forster resonance energy transfer.
J Biomed Opt. 2009 Jul-Aug;14(4):040502 doi: 10.1117/1.3174429
pmid: 19725707
Suo G, Jiang Y, Cowan B, Wang JY.
Platelet-derived growth factor C is upregulated in human uterine fibroids and regulates uterine smooth muscle cell growth.
Biol Reprod. 2009 Oct;81(4):749-58 doi: 10.1095/biolreprod.109.076869
pmid: 19553600
Suto K, Masuda H, Takenaka Y, Tsuji FI, Mizuno H.
Structural basis for red-shifted emission of a GFP-like protein from the marine copepod Chiridius poppei.
Genes Cells. 2009 Jun;14(6):727-37 doi: 10.1111/j.1365-2443.2009.01305.x
pmid: 19469881
Vander Heyden AB, Naismith TV, Snapp EL, Hodzic D, Hanson PI.
LULL1 retargets TorsinA to the nuclear envelope revealing an activity that is impaired by the DYT1 dystonia mutation.
Mol Biol Cell. 2009 Jun;20(11):2661-72 doi: 10.1091/mbc.E09-01-0094
pmid: 19339278
Vanlandingham PA, Ceresa BP.
Rab7 regulates late endocytic trafficking downstream of multivesicular body biogenesis and cargo sequestration.
J Biol Chem. 2009 May 1;284(18):12110-24 doi: 10.1074/jbc.M809277200
pmid: 19265192
Walker JC, Harland RM.
microRNA-24a is required to repress apoptosis in the developing neural retina.
Genes Dev. 2009 May 1;23(9):1046-51 doi: 10.1101/gad.1777709
pmid: 19372388
Wang P, Chen Z, Meng ZQ, Fan J, Luo JM, Liang W, Lin JH, Zhou ZH, Chen H, Wang K, Shen YH, Xu ZD, Liu LM.
Dual role of Ski in pancreatic cancer cells: tumor-promoting versus metastasis-suppressive function.
Carcinogenesis. 2009 Sep;30(9):1497-506 doi: 10.1093/carcin/bgp154
pmid: 19546161
Wang Y, Hanifi-Moghaddam P, Hanekamp EE, Kloosterboer HJ, Franken P, Veldscholte J, van Doorn HC, Ewing PC, Kim JJ, Grootegoed JA, Burger CW, Fodde R, Blok LJ.
Progesterone inhibition of Wnt/β-catenin signaling in normal endometrium and endometrial cancer.
Clin Cancer Res. 2009 Sep 15;15(18):5784-93 doi: 10.1158/1078-0432.CCR-09-0814
pmid: 19737954
Weisova P, Concannon CG, Devocelle M, Prehn JH, Ward MW.
Regulation of glucose transporter 3 surface expression by the AMP-activated protein kinase mediates tolerance to glutamate excitation in neurons.
J Neurosci. 2009 Mar 4;29(9):2997-3008 doi: 10.1523/JNEUROSCI.0354-09.2009
pmid: 19261894
Wu F, Zhu S, Ding Y, Beck WT, Mo YY.
MicroRNA-mediated regulation of Ubc9 expression in cancer cells.
Clin Cancer Res. 2009 Mar 1;15(5):1550-7 doi: 10.1158/1078-0432.CCR-08-0820
pmid: 19223510
Yamauchi J, Miyamoto Y, Torii T, Mizutani R, Nakamura K, Sanbe A, Koide H, Kusakawa S, Tanoue A.
Valproic acid-inducible Arl4D and cytohesin-2/ARNO, acting through the downstream Arf6, regulate neurite outgrowth in N1E-115 cells.
Exp Cell Res. 2009 Jul 15;315(12):2043-52 doi: 10.1016/j.yexcr.2009.03.012
pmid: 19327349
Yan D, Dong Xda E, Chen X, Wang L, Lu C, Wang J, Qu J, Tu L.
MicroRNA-1/206 targets c-Met and inhibits rhabdomyosarcoma development.
J Biol Chem. 2009 Oct 23;284(43):29596-604 doi: 10.1074/jbc.M109.020511
pmid: 19710019
Yip L, Su L, Sheng D, Chang P, Atkinson M, Czesak M, Albert PR, Collier AR, Turley SJ, Fathman CG, Creusot RJ.
Deaf1 isoforms control the expression of genes encoding peripheral tissue antigens in the pancreatic lymph nodes during type 1 diabetes.
Nat Immunol. 2009 Sep;10(9):1026-33 doi: 10.1038/ni.1773
pmid: 19668219
Zakharova MY, Kuznetsov NA, Dubiley SA, Kozyr AV, Fedorova OS, Chudakov DM, Knorre DG, Shemyakin IG, Gabibov AG, Kolesnikov AV.
Substrate recognition of anthrax lethal factor examined by combinatorial and pre-steady-state kinetic approaches.
J Biol Chem. 2009 Jul 3;284(27):17902-13 doi: 10.1074/jbc.M807510200
pmid: 19359249
Zhang Z, Zeng B, Zhang Z, Jiao G, Li H, Jing Z, Ouyang J, Yuan X, Chai L, Che Y, Zhang Y, Yang R.
Suppressor of cytokine signaling 3 promotes bone marrow cells to differentiate into CD8+ T lymphocytes in lung tissue via up-regulating Notch1 expression.
Cancer Res. 2009 Feb 15;69(4):1578-86 doi: 10.1158/0008-5472.CAN-08-2744
pmid: 19190337
Zhu MH, Kim TW, Ro S, Yan W, Ward SM, Koh SD, Sanders KM.
A Ca(2+)-activated Cl(-) conductance in interstitial cells of Cajal linked to slow wave currents and pacemaker activity.
J Physiol. 2009 Oct 15;587(Pt 20):4905-18 doi: 10.1113/jphysiol.2009.176206
pmid: 19703958
Ziera T, Irlbacher H, Fromm A, Latouche C, Krug SM, Fromm M, Jaisser F, Borden SA.
Cnksr3 is a direct mineralocorticoid receptor target gene and plays a key role in the regulation of the epithelial sodium channel.
FASEB J. 2009 Nov;23(11):3936-46 doi: 10.1096/fj.09-134759
pmid: 19567370
Zou L, Zhou J, Zhang J, Li J, Liu N, Chai L, Li N, Liu T, Li L, Xie Z, Liu H, Wan Y, Wu Y.
The GTPase Rab3b/3c-positive recycling vesicles are involved in cross-presentation in dendritic cells.
Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15801-6 doi: 10.1073/pnas.0905684106
pmid: 19717423
Abbott KL, Matthews RT, Pierce M.
Receptor tyrosine phosphatase beta (RPTPbeta) activity and signaling are attenuated by glycosylation and subsequent cell surface galectin-1 binding.
J Biol Chem. 2008 Nov 28;283(48):33026-35 doi: 10.1074/jbc.M803646200
pmid: 18838383
Arrach N, Zhao M, Porwollik S, Hoffman RM, McClelland M.
Salmonella promoters preferentially activated inside tumors.
Cancer Res. 2008 Jun 15;68(12):4827-32 doi: 10.1158/0008-5472.CAN-08-0552
pmid: 18559530
Belogurov AA Jr, Kurkova IN, Friboulet A, Thomas D, Misikov VK, Zakharova MY, Suchkov SV, Kotov SV, Alehin AI, Avalle B, Souslova EA, Morse HC 3rd, Gabibov AG, Ponomarenko NA.
Recognition and degradation of myelin basic protein peptides by serum autoantibodies: novel biomarker for multiple sclerosis.
J Immunol. 2008 Jan 15;180(2):1258-67
pmid: 18178866
Deliolanis NC, Kasmieh R, Wurdinger T, Tannous BA, Shah K, Ntziachristos V.
Performance of the red-shifted fluorescent proteins in deep-tissue molecular imaging applications.
J Biomed Opt. 2008 Jul-Aug;13(4):044008 doi: 10.1117/1.2967184
pmid: 19021336
Duan Z, Weinstein EJ, Ji D, Ames RY, Choy E, Mankin H, Hornicek FJ.
Lentiviral short hairpin RNA screen of genes associated with multidrug resistance identifies PRP-4 as a new regulator of chemoresistance in human ovarian cancer.
Mol Cancer Ther. 2008 Aug;7(8):2377-85 doi: 10.1158/1535-7163.MCT-08-0316
pmid: 18687998
Ebine K, Okatani Y, Uemura T, Goh T, Shoda K, Niihama M, Morita MT, Spitzer C, Otegui MS, Nakano A, Ueda T.
A SNARE complex unique to seed plants is required for protein storage vacuole biogenesis and seed development of Arabidopsis thaliana.
Plant Cell. 2008 Nov;20(11):3006-21 doi: 10.1105/tpc.107.057711
pmid: 18984676
Garcia-Bates TM, Bernstein SH, Phipps RP.
Peroxisome proliferator-activated receptor gamma overexpression suppresses growth and induces apoptosis in human multiple myeloma cells.
Clin Cancer Res. 2008 Oct 15;14(20):6414-25 doi: 10.1158/1078-0432.CCR-08-0457
pmid: 18927280
Grant DM, Zhang W, McGhee EJ, Bunney TD, Talbot CB, Kumar S, Munro I, Dunsby C, Neil MA, Katan M, French PM.
Multiplexed FRET to image multiple signaling events in live cells.
Biophys J. 2008 Nov 15;95(10):L69-71 doi: 10.1529/biophysj.108.139204
pmid: 18757561
Greber D, El-Baba MD, Fussenegger M.
Intronically encoded siRNAs improve dynamic range of mammalian gene regulation systems and toggle switch.
Nucleic Acids Res. 2008 Sep;36(16):e101 doi: 10.1093/nar/gkn443
pmid: 18632760
Hazelwood LA, Free RB, Cabrera DM, Skinbjerg M, Sibley DR.
Reciprocal modulation of function between the D1 and D2 dopamine receptors and the Na+,K+-ATPase.
J Biol Chem. 2008 Dec 26;283(52):36441-53 doi: 10.1074/jbc.M805520200
pmid: 18984584
Held MA, Boulaflous A, Brandizzi F.
Advances in fluorescent protein-based imaging for the analysis of plant endomembranes.
Plant Physiol. 2008 Aug;147(4):1469-81 doi: 10.1104/pp.108.120147
pmid: 18678739
Hoffman RM.
A better fluorescent protein for whole-body imaging.
Trends Biotechnol. 2008 Jan;26(1):1-4
pmid: 18037177
Ikeda T, Ohsugi T, Kimura T, Matsushita S, Maeda Y, Harada S, Koito A.
The antiretroviral potency of APOBEC1 deaminase from small animal species.
Nucleic Acids Res. 2008 Dec;36(21):6859-71 doi: 10.1093/nar/gkn802
pmid: 18971252
Kadereit B, Kumar P, Wang WJ, Miranda D, Snapp EL, Severina N, Torregroza I, Evans T, Silver DL.
Evolutionarily conserved gene family important for fat storage.
Proc Natl Acad Sci U S A. 2008 Jan 8;105(1):94-9
pmid: 18160536
Kapoor V, Karpov V, Linton C, Subach FV, Verkhusha VV, Telford WG.
Solid state yellow and orange lasers for flow cytometry.
Cytometry A. 2008 Jun;73(6):570-7 doi: 10.1002/cyto.a.20563
pmid: 18449918
Koh SW, Chandrasekara K, Abbondandolo CJ, Coll TJ, Rutzen AR.
VIP and VIP gene silencing modulation of differentiation marker N-cadherin and cell shape of corneal endothelium in human corneas ex vivo.
Invest Ophthalmol Vis Sci. 2008 Aug;49(8):3491-8 doi: 10.1167/iovs.07-1543
pmid: 18441300
Kwok S, Lee C, Sanchez SA, Hazlett TL, Gratton E, Hayashi Y.
Genetically encoded probe for fluorescence lifetime imaging of CaMKII activity.
Biochem Biophys Res Commun. 2008 May 2;369(2):519-25 doi: 10.1016/j.bbrc.2008.02.070
pmid: 18302935
Lartigue L, Medina C, Schembri L, Chabert P, Zanese M, Tomasello F, Dalibart R, Thoraval D, Crouzet M, Ichas F, De Giorgi F.
An intracellular wave of cytochrome c propagates and precedes Bax redistribution during apoptosis.
J Cell Sci. 2008 Nov 1;121(Pt 21):3515-23 doi: 10.1242/jcs.029587
pmid: 18840646
Manna D, Bhardwaj N, Vora MS, Stahelin RV, Lu H, Cho W.
Differential roles of phosphatidylserine, PtdIns(4,5)P2, and PtdIns(3,4,5)P3 in plasma membrane targeting of C2 domains. Molecular dynamics simulation, membrane binding, and cell translocation studies of the PKCalpha C2 domain.
J Biol Chem. 2008 Sep 19;283(38):26047-58 doi: 10.1074/jbc.M802617200
pmid: 18621733
Martynova NY, Eroshkin FM, Ermolina LV, Ermakova GV, Korotaeva AL, Smurova KM, Gyoeva FK, Zaraisky AG.
The LIM-domain protein Zyxin binds the homeodomain factor Xanf1/Hesx1 and modulates its activity in the anterior neural plate of Xenopus laevis embryo.
Dev Dyn. 2008 Mar;237(3):736-49 doi: 10.1002/dvdy.21471
pmid: 18297730
Niwa S, Tanaka Y, Hirokawa N.
KIF1Bβ- and KIF1A-mediated axonal transport of presynaptic regulator Rab3 occurs in a GTP-dependent manner through DENN/MADD.
Nat Cell Biol. 2008 Nov;10(11):1269-79 doi: 10.1038/ncb1785
pmid: 18849981
Nokes RL, Fields IC, Collins RN, Folsch H.
Rab13 regulates membrane trafficking between TGN and recycling endosomes in polarized epithelial cells.
J Cell Biol. 2008 Sep 8;182(5):845-53 doi: 10.1083/jcb.200802176
pmid: 18779367
Ohsawa S, Hamada S, Yoshida H, Miura M.
Caspase-mediated changes in histone H1 in early apoptosis: prolonged caspase activation in developing olfactory sensory neurons.
Cell Death Differ. 2008 Sep;15(9):1429-39 doi: 10.1038/cdd.2008.71
pmid: 18483489
Oikawa T, Itoh T, Takenawa T.
Sequential signals toward podosome formation in NIH-src cells.
J Cell Biol. 2008 Jul 14;182(1):157-69 doi: 10.1083/jcb.200801042
pmid: 18606851
Ouyang M, Sun J, Chien S, Wang Y.
Determination of hierarchical relationship of Src and Rac at subcellular locations with FRET biosensors.
Proc Natl Acad Sci U S A. 2008 Sep 23;105(38):14353-8 doi: 10.1073/pnas.0807537105
pmid: 18799748
Pletnev S, Shcherbo D, Chudakov DM, Pletneva N, Merzlyak EM, Wlodawer A, Dauter Z, Pletnev V.
A crystallographic study of bright far-red fluorescent protein mKate reveals pH-induced cis-trans isomerization of the chromophore.
J Biol Chem. 2008 Oct 24;283(43):28980-7 doi: 10.1074/jbc.M800599200
pmid: 18682399
Roelofsen T, Akkers R, Beumer W, Apotheker M, Steeghs I, van de Ven J, Gelderblom C, Garritsen A, Dechering K.
Sphingosine-1-phosphate acts as a developmental stage specific inhibitor of platelet-derived growth factor-induced chemotaxis of osteoblasts.
J Cell Biochem. 2008 Nov 1;105(4):1128-38 doi: 10.1002/jcb.21915
pmid: 18819098
Satoh T, Arii J, Suenaga T, Wang J, Kogure A, Uehori J, Arase N, Shiratori I, Tanaka S, Kawaguchi Y, Spear PG, Lanier LL, Arase H.
PILRalpha is a herpes simplex virus-1 entry coreceptor that associates with glycoprotein B.
Cell. 2008 Mar 21;132(6):935-44 doi: 10.1016/j.cell.2008.01.043
pmid: 18358807
Shaner NC, Lin MZ, McKeown MR, Steinbach PA, Hazelwood KL, Davidson MW, Tsien RY.
Improving the photostability of bright monomeric orange and red fluorescent proteins.
Nat Methods. 2008 Jun;5(6):545-51 doi: 10.1038/nmeth.1209
pmid: 18454154
Stepanenko OV, Verkhusha VV, Kuznetsova IM, Uversky VN, Turoverov KK.
Fluorescent proteins as biomarkers and biosensors: throwing color lights on molecular and cellular processes.
Curr Protein Pept Sci. 2008 Aug;9(4):338-69 http://asb.aecom.yu.edu
pmid: 18691124
Subach OM, Gundorov IS, Yoshimura M, Subach FV, Zhang J, Gruenwald D, Souslova EA, Chudakov DM, Verkhusha VV.
Conversion of Red Fluorescent Protein into a Bright Blue Probe.
Chem Biol. 2008 Oct 20;15(10):1116-24 doi: 10.1016/j.chembiol.2008.08.006
pmid: 18940671
Tian Y, Corkey RF, Yaney GC, Goforth PB, Satin LS, Moitoso de Vargas L.
Differential modulation of L-type calcium channel subunits by oleate.
Am J Physiol Endocrinol Metab. 2008 Jun;294(6):E1178-86 doi: 10.1152/ajpendo.90237.2008
pmid: 18430963
Turchin IV, Kamensky VA, Plehanov VI, Orlova AG, Kleshnin MS, Fiks II, Shirmanova MV, Meerovich IG, Arslanbaeva LR, Jerdeva VV, Savitsky AP.
Fluorescence diffuse tomography for detection of red fluorescent protein expressed tumors in small animals.
J Biomed Opt. 2008 Jul-Aug;13(4):041310 doi: 10.1117/1.2953528
pmid: 19021318
Wang L, Zhou GB, Liu P, Song JH, Liang Y, Yan XJ, Xu F, Wang BS, Mao JH, Shen ZX, Chen SJ, Chen Z.
Dissection of mechanisms of Chinese medicinal formula Realgar-Indigo naturalis as an effective treatment for promyelocytic leukemia.
Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4826-31 doi: 10.1073/pnas.0712365105
pmid: 18344322
Wang YY, Yang Y, Chen Q, Yu J, Hou Y, Han L, He J, Jiao D, Yu H.
Simultaneous knockdown of p18INK4C, p27Kip1 and MAD1 via RNA interference results in the expansion of long-term culture-initiating cells of murine bone marrow cells in vitro.
Acta Biochim Biophys Sin (Shanghai). 2008 Aug;40(8):711-20
pmid: 18685787
Weill CO, Biri S, Adib A, Erbacher P.
A practical approach for intracellular protein delivery.
Cytotechnology. 2008 Jan;56(1):41-8 doi: 10.1007/s10616-007-9102-3
pmid: 19002840
Winnard PT Jr, Pathak AP, Dhara S, Cho SY, Raman V, Pomper MG.
Molecular imaging of metastatic potential.
J Nucl Med. 2008 Jun;49 Suppl 2:96S-112S doi: 10.2967/jnumed.107.045948
pmid: 18523068
Yamauchi J, Miyamoto Y, Kusakawa S, Torii T, Mizutani R, Sanbe A, Nakajima H, Kiyokawa N, Tanoue A.
Neurofibromatosis 2 tumor suppressor, the gene induced by valproic acid, mediates neurite outgrowth through interaction with paxillin.
Exp Cell Res. 2008 Jul 1;314(11-12):2279-88 doi: 10.1016/j.yexcr.2008.03.019
pmid: 18486129
Yamochi T, Ohnuma K, Hosono O, Tanaka H, Kanai Y, Morimoto C.
SSA/Ro52 autoantigen interacts with Dcp2 to enhance its decapping activity.
Biochem Biophys Res Commun. 2008 May 23;370(1):195-9 doi: 10.1016/j.bbrc.2008.03.075
pmid: 18361920
Baker DJ, Wuenschell G, Xia L, Termini J, Bates SE, Riggs AD, O'Connor TR.
Nucleotide excision repair eliminates unique DNA-protein cross-links from mammalian cells.
J Biol Chem. 2007 Aug 3;282(31):22592-604
pmid: 17507378
Bell P, Vandenberghe LH, Wu D, Johnston J, Limberis M, Wilson JM.
A comparative analysis of novel fluorescent proteins as reporters for gene transfer studies.
J Histochem Cytochem. 2007 Sep;55(9):931-9
pmid: 17510373
Brueggemann LI, Moran CJ, Barakat JA, Yeh JZ, Cribbs LL, Byron KL.
Vasopressin stimulates action potential firing by protein kinase C-dependent inhibition of KCNQ5 in A7r5 rat aortic smooth muscle cells.
Am J Physiol Heart Circ Physiol. 2007 Mar;292(3):H1352-63
pmid: 17071736
Chiappetta G, De Marco C, Quintiero A, Califano D, Gherardi S, Malanga D, Scrima M, Montero-Conde C, Cito L, Monaco M, Motti ML, Pasquinelli R, Agosti V, Robledo M, Fusco A, Viglietto G.
Overexpression of the S-phase kinase-associated protein 2 in thyroid cancer.
Endocr Relat Cancer. 2007 Jun;14(2):405-20
pmid: 17639054
Condon KC, Condon GC, Dafa'alla TH, Forrester OT, Phillips CE, Scaife S, Alphey L.
Germ-line transformation of the Mexican fruit fly.
Insect Mol Biol. 2007 Oct;16(5):573-80
pmid: 17894556
D'Autreaux F, Morikawa Y, Cserjesi P, Gershon MD.
Hand2 is necessary for terminal differentiation of enteric neurons from crest-derived precursors but not for their migration into the gut or for formation of glia.
Development. 2007 Jun;134(12):2237-49
pmid: 17507395
G. McNamara and C.A. Boswell.
A Thousand Proteins of Light: 15 Years of Advances in Fluorescent Proteins.
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Goodin MM, Chakrabarty R, Banerjee R, Yelton S, Debolt S.
New gateways to discovery.
Plant Physiol. 2007 Dec;145(4):1100-9
pmid: 18056860
Hattori H, Zhang X, Jia Y, Subramanian KK, Jo H, Loison F, Newburger PE, Luo HR.
RNAi screen identifies UBE2D3 as a mediator of all-trans retinoic acid-induced cell growth arrest in human acute promyelocytic NB4 cells.
Blood. 2007 Jul 15;110(2):640-50
pmid: 17420285
He T, Zong S, Wu X, Wei Y, Xiang J
CD4+ T cell acquisition of the bystander pMHC I colocalizing in the same immunological synapse comprising pMHC II and costimulatory CD40, CD54, CD80, OX40L, and 41BBL.
Biochem Biophys Res Commun. 2007 Nov 3;362(4):822-8
pmid: 17803957
Hong J, Doebele RC, Lingen MW, Quilliam LA, Tang WJ, Rosner MR.
Anthrax edema toxin inhibits endothelial cell chemotaxis via Epac and Rap1.
J Biol Chem. 2007 Jul 6;282(27):19781-7
pmid: 17491018
Hultman KA, Bahary N, Zon LI, Johnson SL.
Gene Duplication of the zebrafish kit ligand and partitioning of melanocyte development functions to kit ligand a.
PLoS Genet. 2007 Jan 26;3(1):e17
pmid: 17257055
Hurtaud C, Gelly C, Chen Z, Levi-Meyrueis C, Bouillaud F.
Glutamine stimulates translation of uncoupling protein 2mRNA.
Cell Mol Life Sci. 2007 Jul;64(14):1853-60
pmid: 17514359
Issa R, Xie S, Khorasani N, Sukkar M, Adcock IM, Lee KY, Chung KF.
Corticosteroid inhibition of growth-related oncogene protein-alpha via mitogen-activated kinase phosphatase-1 in airway smooth muscle cells.
J Immunol. 2007 Jun 1;178(11):7366-75
pmid: 17513787
Kanemaru K, Okubo Y, Hirose K, Iino M.
Regulation of neurite growth by spontaneous Ca²⁺ oscillations in astrocytes.
J Neurosci. 2007 Aug 15;27(33):8957-66
pmid: 17699677
Li QB, Chen ZC, You Y, Zou P.
Small interfering RNA of cyclooxygenase-2 induces growth inhibition and apoptosis independently of Bcl-2 in human myeloma RPMI8226 cells.
Acta Pharmacol Sin. 2007 Jul;28(7):1031-6
pmid: 17588340
Ma LH, Liu H, Xiong H, Chen B, Zhang XW, Wang YY, Le HY, Huang QH, Zhang QH, Li BL, Chen Z, Chen SJ.
Aberrant transcriptional regulation of the MLL fusion partner EEN by AML1-ETO and its implication in leukemogenesis.
Blood. 2007 Jan 15;109(2):769-77
pmid: 16990610
Merzlyak EM, Goedhart J, Shcherbo D, Bulina ME, Shcheglov AS, Fradkov AF, Gaintzeva A, Lukyanov KA, Lukyanov S, Gadella TW, Chudakov DM.
Bright monomeric red fluorescent protein with an extended fluorescence lifetime.
Nat Methods. 2007 Jul;4(7):555-7
pmid: 17572680
Miyamoto Y, Yamauchi J, Chan JR, Okada A, Tomooka Y, Hisanaga S, Tanoue A.
Cdk5 regulates differentiation of oligodendrocyte precursor cells through the direct phosphorylation of paxillin.
J Cell Sci. 2007 Dec 15;120(Pt 24):4355-66
pmid: 18042622
Mocz G.
Fluorescent proteins and their use in marine biosciences, biotechnology, and proteomics.
Mar Biotechnol (NY). 2007 May-Jun;9(3):305-28
pmid: 17372780
Olenych SG, Claxton NS, Ottenberg GK, Davidson MW.
The fluorescent protein color palette.
Curr Protoc Cell Biol. 2007 Sep;Chapter 21:Unit 21.5 doi: 10.1002/0471143030.cb2105s36
pmid: 18228502
Pletneva N, Pletnev V, Tikhonova T, Pakhomov AA, Popov V, Martynov VI, Wlodawer A, Dauter Z, Pletnev S.
Refined crystal structures of red and green fluorescent proteins from the button polyp Zoanthus.
Acta Crystallogr D Biol Crystallogr. 2007 Oct;63(Pt 10):1082-93
pmid: 17881826
Pletneva NV, Pletnev SV, Chudakov DM, Tikhonova TV, Popov VO, Martynov VI, Wlodawer A, Dauter Z, Pletnev VZ.
Three-dimensional structure of yellow fluorescent protein zYFP538 from Zoanthus sp. at the resolution 1.8 angstrom.
Bioorg Khim. 2007 Jul-Aug;33(4):421-30 http://www.springerlink.com
pmid: 17886433
Ray P, Tsien R, Gambhir SS.
Construction and validation of improved triple fusion reporter gene vectors for molecular imaging of living subjects.
Cancer Res. 2007 Apr 1;67(7):3085-93
pmid: 17409415
Shaner NC, Patterson GH, Davidson MW.
Advances in fluorescent protein technology.
J Cell Sci. 2007 Dec 15;120(Pt 24):4247-60
pmid: 18057027
Shcherbo D, Merzlyak EM, Chepurnykh TV, Fradkov AF, Ermakova GV, Solovieva EA, Lukyanov KA, Bogdanova EA, Zaraisky AG, Lukyanov S, Chudakov DM.
Bright far-red fluorescent protein for whole-body imaging.
Nat Methods. 2007 Sep;4(9):741-6
pmid: 17721542
Stoner MA, Auerbach SS, Zamule SM, Strom SC, Omiecinski CJ.
Transactivation of a DR-1 PPRE by a human constitutive androstane receptor variant expressed from internal protein translation start sites.
Nucleic Acids Res. 2007;35(7):2177-90
pmid: 17355985
Yamauchi J, Miyamoto Y, Murabe M, Fujiwara Y, Sanbe A, Fujita Y, Murase S, Tanoue A.
Gadd45a, the gene induced by the mood stabilizer valproic acid, regulates neurite outgrowth through JNK and the substrate paxillin in N1E-115 neuroblastoma cells.
Exp Cell Res. 2007 May 15;313(9):1886-96
pmid: 17428471
Agarwal S, Harada J, Schreifels J, Lech P, Nikolai B, Yamaguchi T, Chanda SK, Somia NV.
Isolation, characterization, and genetic complementation of a cellular mutant resistant to retroviral infection.
Proc Natl Acad Sci U S A. 2006 Oct 24;103(43):15933-8
pmid: 17043244
Cohen EE, Lingen MW, Zhu B, Zhu H, Straza MW, Pierce C, Martin LE, Rosner MR.
Protein kinase C zeta mediates epidermal growth factor-induced growth of head and neck tumor cells by regulating mitogen-activated protein kinase.
Cancer Res. 2006 Jun 15;66(12):6296-303
pmid: 16778206
Efimov VA, Birikh KR, Staroverov DB, Lukyanov SA, Tereshina MB, Zaraisky AG, Chakhmakhcheva OG.
Hydroxyproline-based DNA mimics provide an efficient gene silencing in vitro and in vivo.
Nucleic Acids Res. 2006 May 2;34(8):2247-57
pmid: 16670431
Evdokimov AG, Pokross ME, Egorov NS, Zaraisky AG, Yampolsky IV, Merzlyak EM, Shkoporov AN, Sander I, Lukyanov KA, Chudakov DM.
Structural basis for the fast maturation of Arthropoda green fluorescent protein.
EMBO Rep. 2006 Oct;7(10):1006-12
pmid: 16936637
Fujibe T, Saji H, Watahiki MK, Yamamoto KT.
Overexpression of the RADICAL-INDUCED CELL DEATH1 (RCD1) gene of Arabidopsis causes weak rcd1 phenotype with compromised oxidative-stress responses.
Biosci Biotechnol Biochem. 2006 Aug;70(8):1827-31
pmid: 16926493
Gur'ianova OA, Makhanov M, Chenchik AA, Chumakov PM, Frolova EI.
Genome-wide lentivector-based pooled shRNA library optimization.
Mol Biol (Mosk). 2006 May-Jun;40(3):448-59 (in Russian)
pmid: 16813164
Hayakawa T, Kudo T, Ito T, Takahashi N, Yamaya T.
ACT domain repeat protein 7, ACR7, interacts with a chaperone HSP18.0-CII in rice nuclei.
Plant Cell Physiol. 2006 Jul;47(7):891-904
pmid: 16720649
McBeath AJ, Collet B, Paley R, Duraffour S, Aspehaug V, Biering E, Secombes CJ, Snow M.
Identification of an interferon antagonist protein encoded by segment 7 of infectious salmon anaemia virus.
Virus Res. 2006 Feb;115(2):176-84
pmid: 16202469
Patwari P, Higgins LJ, Chutkow WA, Yoshioka J, Lee RT.
The interaction of thioredoxin with Txnip. Evidence for formation of a mixed disulfide by disulfide exchange.
J Biol Chem. 2006 Aug 4;281(31):21884-91
pmid: 16766796
Rumi M, Ishihara S, Aziz M, Kazumori H, Ishimura N, Yuki T, Kadota C, Kadowaki Y, Kinoshita Y.
RNA polymerase II mediated transcription from the polymerase III promoters in short hairpin RNA expression vector.
Biochem Biophys Res Commun. 2006 Jan 13;339(2):540-7
pmid: 16300730
Serganova I , Moroz E, Moroz M, Pillarsetty N, Blasberg R
Non-invasive molecular imaging and reporter genes.
Central European Journal of Biology. 2006 1;1:88-123 http://www.springer.com/
Souslova EA, Chudakov DM.
Photoswitchable cyan fluorescent protein as a FRET donor.
Microsc Res Tech. 2006 Mar;69(3):207-9
pmid: 16538627
Vallon M, Essler M.
Proteolytically processed soluble tumor endothelial marker (TEM) 5 mediates endothelial cell survival during angiogenesis by linking integrin alpha(v)beta3 to glycosaminoglycans.
J Biol Chem. 2006 Nov 10;281(45):34179-88
pmid: 16982628
Wilmann PG, Battad J, Petersen J, Wilce MC, Dove S, Devenish RJ, Prescott M, Rossjohn J.
The 2.1A crystal structure of copGFP, a representative member of the copepod clade within the green fluorescent protein superfamily.
J Mol Biol. 2006 Jun 16;359(4):890-900
pmid: 16697009
Chudakov DM, Lukyanov S, Lukyanov KA.
Fluorescent proteins as a toolkit for in vivo imaging.
Trends Biotechnol. 2005 Dec;23(12):605-13
pmid: 16269193
Comley J.
HIGH CONTENT SCREENING emerging importance of novel reagents/probes and pathway analysis.
Drug Discovery World Summer. 2005;31-53 http://clients.parabolasoft.co.uk
Shaner NC, Steinbach PA, Tsien RY.
A guide to choosing fluorescent proteins.
Nat Methods. 2005 Dec;2(12):905-9
pmid: 16299475
Yanushevich YG, Shagin DA, Fradkov AF, Shakhbazov KS, Barsova EV, Gurskaya NG, Labas YA, Matz MV, Lukyanov KA, Lukyanov SA.
Spectral diversity among the members of the family of Green Fluorescent Protein in hydroid jellyfish (Cnidaria, Hydrozoa).
Bioorg Khim. 2005 Jan-Feb;31(1):49-53 http://www.springerlink.com
pmid: 15787213
Zhu JX, Goldoni S, Bix G, Owens RT, McQuillan DJ, Reed CC, Iozzo RV.
Decorin evokes protracted internalization and degradation of the epidermal growth factor receptor via caveolar endocytosis.
J Biol Chem. 2005 Sep 16;280(37):32468-79
pmid: 15994311
Hawley TS, Herbert DJ, Eaker SS, Hawley RG.
Multiparameter flow cytometry of fluorescent protein reporters.
Methods Mol Biol. 2004;263:219-38
pmid: 14976369
Shagin DA, Barsova EV, Yanushevich YG, Fradkov AF, Lukyanov KA, Labas YA, Semenova TN, Ugalde JA, Meyers A, Nunez JM, Widder EA, Lukyanov SA, Matz MV.
GFP-like proteins as ubiquitous metazoan superfamily: evolution of functional features and structural complexity.
Mol Biol Evol. 2004 May;21(5):841-50
pmid: 14963095


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