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References citing Evrogen products & services

2018
  • Formella I, Svahn AJ, Radford RAW, Don EK, Cole NJ, Hogan A, Lee A, Chung RS, Morsch M.
    Real-time visualization of oxidative stress-mediated neurodegeneration of individual spinal motor neurons in vivo.
    Redox Biol. 2018 Aug 23;19:226-234 doi: 10.1016/j.redox.2018.08.011
    pmid: 30193184
  • Corteselli EM, Samet JM, Gibbs-Flournoy EA.
    Imaging Approaches to Assessments of Toxicological Oxidative Stress Using Genetically-encoded Fluorogenic Sensors.
    J Vis Exp. 2018 Feb 7;(132.): doi: 10.3791/56945
    pmid: 29443110
2017
  • Schneider M, Prudic K, Pippel A, Klapperstuck M, Braam U, Muller CE, Schmalzing G, Markwardt F.
    Interaction of Purinergic P2X4 and P2X7 Receptor Subunits.
    Front Pharmacol. 2017 Nov 22;8:860 doi: 10.3389/fphar.2017.00860
    pmid: 29213241
  • Palmisano NJ, Rosario N, Wysocki M, Hong M, Grant B, Melendez A.
    The recycling endosome protein RAB-10 promotes autophagic flux and localization of the transmembrane protein ATG-9.
    Autophagy. 2017 Oct 3;13(10):1742-1753 doi: 10.1080/15548627.2017.1356976
    pmid: 28872980
  • Wasserberg D, Cabanas-Danes J, Prangsma J, O'Mahony S, Cazade PA, Tromp E, Blum C, Thompson D, Huskens J, Subramaniam V, Jonkheijm P.
    Controlling Protein Surface Orientation by Strategic Placement of Oligo-Histidine Tags.
    ACS Nano. 2017 Sep 26;11(9):9068-9083 doi: 10.1021/acsnano.7b03717
    pmid: 28850777
  • Blagodatskikh KA, Kramarov VM, Barsova EV, Garkovenko AV, Shcherbo DS, Shelenkov AA, Ustinova VV, Tokarenko MR, Baker SC, Kramarova TV, Ignatov KB.
    Improved DOP-PCR (iDOP-PCR): A robust and simple WGA method for efficient amplification of low copy number genomic DNA.
    PLoS One. 2017 Sep 11;12(9):e0184507 doi: 10.1371/journal.pone.0184507
    pmid: 28892497
  • Kashkin KN, Chernov IP, Didych DA, Sverdlov ED.
    Construction of a combinatorial library of chimeric tumor-specific promoters.
    Biotechniques. 2017 Sep 1;63(3):107-116 doi: 10.2144/000114586
    pmid: 28911314
  • Kost LA, Nikitin ES, Ivanova VO, Sung U, Putintseva EV, Chudakov DM, Balaban PM, Lukyanov KA, Bogdanov AM.
    Insertion of the voltage-sensitive domain into circularly permuted red fluorescent protein as a design for genetically encoded voltage sensor.
    PLoS One. 2017 Sep 1;12(9):e0184225 doi: 10.1371/journal.pone.0184225
    pmid: 28863184
  • Moiseev A, Snopova L, Kuznetsov S, Buyanova N, Elagin V, Sirotkina M, Kiseleva E, Matveev L, Zaytsev V, Feldchtein F, Zagaynova E, Gelikonov V, Gladkova N, Vitkin A, Gelikonov G.
    Pixel classification method in optical coherence tomography for tumor segmentation and its complementary usage with OCT microangiography.
    J Biophotonics. 2017 Aug 29.;[Epub ahead of print] doi: 10.1002/jbio.201700072
    pmid: 28853237
  • Norris DM, Yang P, Krycer JR, Fazakerley DJ, James DE, Burchfield JG.
    An improved Akt reporter reveals intra- and inter-cellular heterogeneity and oscillations in signal transduction.
    J Cell Sci. 2017 Aug 15;130(16):2757-2766 doi: 10.1242/jcs.205369
    pmid: 28663386
  • Shelukhina I, Spirova E, Kudryavtsev D, Ojomoko L, Werner M, Methfessel C, Hollmann M, Tsetlin V.
    Calcium imaging with genetically encoded sensor Case12: Facile analysis of α7/α9 nAChR mutants.
    PLoS One. 2017 Aug 10;12(8):e0181936 doi: 10.1371/journal.pone.0181936
    pmid: 28797116
  • Bozhanova NG, Baranov MS, Sarkisyan KS, Gritcenko R, Mineev KS, Golodukhina SV, Baleeva NS, Lukyanov KA, Mishin AS.
    Yellow and Orange Fluorescent Proteins with Tryptophan-based Chromophores.
    ACS Chem Biol. 2017 Jul 21;12(7):1867-1873 doi: 10.1021/acschembio.7b00337
    pmid: 28525263
  • Obeid MA, Elburi A, Young LC, Mullen AB, Tate RJ, Ferro VA.
    Formulation of Nonionic Surfactant Vesicles (NISV) Prepared by Microfluidics for Therapeutic Delivery of siRNA into Cancer Cells.
    Mol Pharm. 2017 Jul 3;14(7):2450-2458 doi: 10.1021/acs.molpharmaceut.7b00352
    pmid: 28570823
  • Hirano T, Stecker K, Munnik T, Xu H, Sato MH.
    Visualization of Phosphatidylinositol 3,5-Bisphosphate Dynamics by a Tandem ML1N-Based Fluorescent Protein Probe in Arabidopsis.
    Plant Cell Physiol. 2017 Jul 1;58(7):1185-1195 doi: 10.1093/pcp/pcx011
    pmid: 28158631
  • Berthelsen MF, Callesen MM, Ostergaard TS, Liu Y, Li R, Callesen H, Dagnaes-Hansen F, Hamilton-Dutoit S, Jakobsen JE, Thomsen MK.
    Pancreas specific expression of oncogenes in a porcine model.
    Transgenic Res. 2017 Jun 29.;[Epub ahead of print] doi: 10.1007/s11248-017-0031-4
    pmid: 28664456
  • Liao ZX, Kempson IM, Fa YC, Liu MC, Hsieh LC, Huang KY, Wang LF.
    Magnetically Guided Viral Transduction of Gene-Based Sensitization for Localized Photodynamic Therapy To Overcome Multidrug Resistance in Breast Cancer Cells.
    Bioconjug Chem. 2017 Jun 21;28(6):1702-1708 doi: 10.1021/acs.bioconjchem.7b00162
    pmid: 28482158
  • Bogdanova YA, Schultz C, Belousov VV.
    Local Generation and Imaging of Hydrogen Peroxide in Living Cells.
    Curr Protoc Chem Biol. 2017 Jun 19;9(2):117-127 doi: 10.1002/cpch.20
    pmid: 28628200
  • Vogel S, Aswendt M, Nelles M, Henn N, Schneider G, Hoehn M.
    Initial graft size and not the innate immune response limit survival of engrafted neural stem cells.
    J Tissue Eng Regen Med. 2017 Jun 9.; doi: 10.1002/term.2497
    pmid: 28599089
  • Shagin DA, Turchaninova MA, Shagina IA, Shugay M, Zaretsky AR, Zueva OI, Bolotin DA, Lukyanov S, Chudakov DM.
    Application of nonsense-mediated primer exclusion (NOPE) for preparation of unique molecular barcoded libraries.
    BMC Genomics. 2017 Jun 5;18(1):440 doi: 10.1186/s12864-017-3815-2
    pmid: 28583065
  • Shagin DA, Shagina IA, Zaretsky AR, Barsova EV, Kelmanson IV, Lukyanov S, Chudakov DM, Shugay M.
    A high-throughput assay for quantitative measurement of PCR errors.
    Sci Rep. 2017 Jun 2;7(1):2718 doi: 10.1038/s41598-017-02727-8
    pmid: 28578414
  • Shugay M, Zaretsky AR, Shagin DA, Shagina IA, Volchenkov IA, Shelenkov AA, Lebedin MY, Bagaev DV, Lukyanov S, Chudakov DM.
    MAGERI: Computational pipeline for molecular-barcoded targeted resequencing.
    PLoS Comput Biol. 2017 May 5;13(5):e1005480 doi: 10.1371/journal.pcbi.1005480
    pmid: 28475621
  • Lee MY, Ha SE, Park C, Park PJ, Fuchs R, Wei L, Jorgensen BG, Redelman D, Ward SM, Sanders KM, Ro S.
    Transcriptome of interstitial cells of Cajal reveals unique and selective gene signatures.
    PLoS One. 2017 Apr 20;12(4):e0176031 doi: 10.1371/journal.pone.0176031
    pmid: 28426719
  • Jiang HN, Li Y, Cui ZJ.
    Photodynamic Physiology-Photonanomanipulations in Cellular Physiology with Protein Photosensitizers.
    Front Physiol. 2017 Apr 4;8:191 doi: 10.3389/fphys.2017.00191
    pmid: 28421000
  • Ganini D, Leinisch F, Kumar A, Jiang J, Tokar EJ, Malone CC, Petrovich RM, Mason RP.
    Fluorescent proteins such as eGFP lead to catalytic oxidative stress in cells.
    Redox Biol. 2017 Mar 10;12:462-468 doi: 10.1016/j.redox.2017.03.002
    pmid: 28334681
  • de Jong NW, van der Horst T, van Strijp JA, Nijland R.
    Fluorescent reporters for markerless genomic integration in Staphylococcus aureus.
    Sci Rep. 2017 Mar 7;7:43889 doi: 10.1038/srep43889
    pmid: 28266573
  • Jacq A, Pernot C, Martinez Y, Domergue F, Payre B, Jamet E, Burlat V, Pacquit VB.
    The Arabidopsis Lipid Transfer Protein 2 (AtLTP2) Is Involved in Cuticle-Cell Wall Interface Integrity and in Etiolated Hypocotyl Permeability.
    Front Plant Sci. 2017 Feb 27;8:263 doi: 10.3389/fpls.2017.00263
    pmid: 28289427
  • Ibáñez-Fonseca A, Alonso M, Arias FJ, Rodri­guez-Cabello JC.
    Förster Resonance Energy Transfer-Paired Hydrogel Forming Silk-Elastin-Like Recombinamers by Recombinant Conjugation of Fluorescent Proteins.
    Bioconjug Chem. 2017 Feb 15;[Epub ahead of print] doi: 10.1021/acs.bioconjchem.6b00738
    pmid: 28158945
  • Tan SY, Teh C, Ang CY, Li M, Li P, Korzh V, Zhao Y.
    Responsive mesoporous silica nanoparticles for sensing of hydrogen peroxide and simultaneous treatment toward heart failure.
    Nanoscale. 2017 Feb 9;9(6):2253-2261 doi: 10.1039/c6nr08869d
    pmid: 28124705
  • Tan R, Nakajima S, Wang Q, Sun H, Xue J, Wu J, Hellwig S, Zeng X, Yates NA, Smithgall TE, Lei M, Jiang Y, Levine AS, Su B, Lan L.
    Nek7 Protects Telomeres from Oxidative DNA Damage by Phosphorylation and Stabilization of TRF1.
    Mol Cell. 2017 Feb 8;pii: S1097-2765(17)30041-2 doi: 10.1016/j.molcel.2017.01.015. [Epub ahead of print]
    pmid: 28216227
  • Klementieva NV, Pavlikov AI, Moiseev AA, Bozhanova NG, Mishina NM, Lukyanov SA, Zagaynova EV, Lukyanov KA, Mishin AS.
    Intrinsic blinking of red fluorescent proteins for super-resolution microscopy.
    Chem Commun (Camb). 2017 Jan 10;53(5):949-951 doi: 10.1039/c6cc09200d
    pmid: 28044165
  • Liang L, Lu Y, Zhang R, Care A, Ortega TA, Deyev SM, Qian Y, Zvyagin AV.
    Deep-penetrating photodynamic therapy with KillerRed mediated by upconversion nanoparticles.
    Acta Biomater. 2017 Jan 4;pii: S1742-7061(17)30004-1 doi: 10.1016/j.actbio.2017.01.004. [Epub ahead of print]
    pmid: 28063989
  • Gensberger ET, Kostic T.
    Green fluorescent protein labeling of food pathogens Yersinia enterocolitica and Yersinia pseudotuberculosis.
    J Microbiol Methods. 2017 Jan;132:21-26 doi: 10.1016/j.mimet.2016.11.008
    pmid: 27838541
  • Fransen M, Brees C.
    KillerRed as a Tool to Study the Cellular Responses to Peroxisome-Derived Oxidative Stress.
    Methods Mol Biol. 2017;1595:165-179 doi: 10.1007/978-1-4939-6937-1_15
    pmid: 28409460
  • Tan R, Lan L.
    Induction of Site-Specific Oxidative Damage at Telomeres by Killerred-Fused Shelretin Proteins.
    Methods Mol Biol. 2017;1587:139-146 doi: 10.1007/978-1-4939-6892-3_14
    pmid: 28324506
2016
  • Zhao Z, Qi F, Liu T, Fu W.
    Effect of miR-146a and miR-155 on cardiac xenotransplantation.
    Exp Ther Med. 2016 Dec;12(6):3972-3978 doi: 10.3892/etm.2016.3867
    pmid: 28101175
  • Tseng SJ, Huang KY, Kempson IM, Kao SH, Liu MC, Yang SC, Liao ZX, Yang PC.
    Remote Control of Light-Triggered Virotherapy.
    ACS Nano. 2016 Nov 22;10(11):10339-10346
    pmid: 27934080
  • Schomann T, Mezzanotte L, Lourens IM, de Groot JC, Frijns JH, Huisman MA.
    Lentiviral transduction and subsequent loading with nanoparticles do not affect cell viability and proliferation in hair-follicle-bulge-derived stem cells in vitro.
    Contrast Media Mol Imaging. 2016 Nov;11(6):550-560 doi: 10.1002/cmmi.1717
    pmid: 27976505
  • Petrova NV, Luzhin AV, Serebrovskaya EO, Ryumina AP, Velichko AK, Razin SV, Kantidze OL.
    Inducing cellular senescence in vitro by using genetically encoded photosensitizers.
    Aging (Albany NY). 2016 Oct 14;8(10):2449-2462 DOI: 10.18632/aging.101065
    pmid: 27744420
  • Elbaz I, Zada D, Tovin A, Braun T, Lerer-Goldshtein T, Wang G, Mourrain P, Appelbaum L.
    Sleep-Dependent Structural Synaptic Plasticity of Inhibitory Synapses in the Dendrites of Hypocretin/Orexin Neurons.
    Mol Neurobiol. 2016 Oct 12;[Epub ahead of print] DOI: 10.1007/s12035-016-0175-x
    pmid: 27734337
  • Xu J, Zhu W, Guo Y, Jiang C, Hussain N, Meng L, Lu S.
    Construction of Conveniently Screening pLKO.1-TRC Vector Tagged with TurboGFP.
    Appl Biochem Biotechnol. 2016 Oct 11;[Epub ahead of print] DOI: 10.1007/s12010-016-2242-1
    pmid: 27730520
  • Zada D, Tovin A, Lerer-Goldshtein T, Appelbaum L.
    Pharmacological and BBB-targeted genetic therapies for thyroid hormone-dependent hypomyelination.
    Dis Model Mech. 2016 Sep 23. pii: dmm.027;
    pmid: 27664134
  • Kuzmenkov AI, Nekrasova OV, Kudryashova KS, Peigneur S, Tytgat J, Stepanov AV, Kirpichnikov MP, Grishin EV, Feofanov AV, Vassilevski AA.
    Fluorescent protein-scorpion toxin chimera is a convenient molecular tool for studies of potassium channels.
    Sci Rep. 2016 Sep 21;6:33314 doi: 10.1038/srep33314
    pmid: 27650866
  • Campbell AE, Bennett D.
    Targeting protein function: the expanding toolkit for conditional disruption.
    Biochem J. 2016 Sep 1;473(17):2573-89 doi: 10.1042/BCJ20160240
    pmid: 27574023
  • Wu M, Wei C, Lian Z, Liu R, Zhu C, Wang H, Cao J, Shen Y, Zhao F, Zhang L, Mu Z, Wang Y, Wang X, Du L, Wang C.
    Rosa26-targeted sheep gene knock-in via CRISPR-Cas9 system.
    Sci Rep. 2016 Apr 11;6:24360 doi: 10.1038/srep24360
    pmid: 27063570
  • Huang K, Caplan J, Sweigard J, Czymmek K, Donofrio N.
    Optimization of the HyPer sensor for robust real-time detection of hydrogen peroxide in the rice blast fungus.
    Mol Plant Pathol. 2016 Mar 7.; doi: 10.1111/mpp.12392
    pmid: 26950262
  • Rouxel RN, Mérour E, Biacchesi S, Brémont M.
    Efficient Co-Replication of Defective Novirhabdovirus.
    Viruses. 2016 Mar 4;8(3):pii: E69 doi: 10.3390/v8030069
    pmid: 26959049
  • Kong Y, Yang D, Cirillo SL, Li S, Akin A, Francis KP, Maloney T, Cirillo JD.
    Application of Fluorescent Protein Expressing Strains to Evaluation of Anti-Tuberculosis Therapeutic Efficacy In Vitro and In Vivo.
    PLoS One. 2016 Mar 2;11(3):e0149972 doi: 10.1371/journal.pone.0149972
    pmid: 26934495
  • Huang BK, Langford TF, Sikes HD.
    Using sensors and generators of H2O2 to elucidate the toxicity mechanism of piperlongumine and phenethyl isothiocyanate.
    Antioxid Redox Signal. 2016 Feb 23;[Epub ahead of print]
    pmid: 26905788
  • Zhou H, Zheng C, Su J, Chen B, Fu Y, Xie Y, Tang Q, Chou SH, He J.
    Characterization of a natural triple-tandem c-di-GMP riboswitch and application of the riboswitch-based dual-fluorescence reporter.
    Sci Rep. 2016 Feb 19;6:20871 doi: 10.1038/srep20871
    pmid: 26892868
  • Edalat L, Stegen B, Klumpp L, Haehl E, Schilbach K, Lukowski R, Kühnle M, Bernhardt G, Buschauer A, Zips D, Ruth P, Huber SM.
    BK K channel blockade inhibits radiation-induced migration/brain infiltration of glioblastoma cells.
    Oncotarget. 2016 Feb 16;[Epub ahead of print] doi: 10.18632/oncotarget.7423
    pmid: 26893360
  • Cameron WD, Bui CV, Hutchinson A, Loppnau P, Gräslund S, Rocheleau JV.
    Apollo-NADP : a spectrally tunable family of genetically encoded sensors for NADP.
    Nat Methods. 2016 Feb 15;[Epub ahead of print] doi: 10.1038/nmeth.3764
    pmid: 26878383
  • Manoharan GB, Enkvist E, Uri A.
    Combining chemical and genetic approaches for development of responsive FRET-based sensor systems for protein kinases.
    Biophys Chem. 2016 Jan 25;211:39-48 doi: 10.1016/j.bpc.2016.01.004
    pmid: 26874332
  • Takehara K, Tazawa H, Okada N, Hashimoto Y, Kikuchi S, Kuroda S, Kishimoto H, Shirakawa Y, Narii N, Mizuguchi H, Urata Y, Kagawa S, Fujiwara T.
    Targeted Photodynamic Virotherapy Armed with a Genetically Encoded Photosensitizer.
    Mol Cancer Ther. 2016 Jan;15(1):199-208 doi: 10.1158/1535-7163.MCT-15-0344
    pmid: 26625896
2015
  • Pletneva NV, Pletnev VZ, Sarkisyan KS, Gorbachev DA, Egorov ES, Mishin AS, Lukyanov KA, Dauter Z, Pletnev S.
    Crystal Structure of Phototoxic Orange Fluorescent Proteins with a Tryptophan-Based Chromophore.
    PLoS One. 2015 Dec 23;10(12):e0145740 doi: 10.1371/journal.pone.0145740
    pmid: 26699366
  • He T, Hatem E, Vernis L, Lei M, Huang ME.
    PRX1 knockdown potentiates vitamin K3 toxicity in cancer cells: a potential new therapeutic perspective for an old drug.
    J Exp Clin Cancer Res. 2015 Dec 21;34(1):152 doi: 10.1186/s13046-015-0270-2
    pmid: 26689287
  • Lackner DH, Carré A, Guzzardo PM, Banning C, Mangena R, Henley T, Oberndorfer S, Gapp BV, Nijman SM, Brummelkamp TR, Bürckstümmer T
    A generic strategy for CRISPR-Cas9-mediated gene tagging.
    Nat Commun. 2015 Dec 17;6:10237 doi: 10.1038/ncomms10237
    pmid: 26674669
  • Sarkisyan KS, Zlobovskaya OA, Gorbachev DA, Bozhanova NG, Sharonov GV, Staroverov DB, Egorov ES, Ryabova AV, Solntsev KM, Mishin AS, Lukyanov KA.
    KillerOrange, a Genetically Encoded Photosensitizer Activated by Blue and Green Light.
    PLoS One. 2015 Dec 17;10(12):e0145287 doi: 10.1371/journal.pone.0145287
    pmid: 26679300
  • Shirmanova M, Yuzhakova D, Snopova L, Perelman G, Serebrovskaya E, Lukyanov K, Turchin I, Subochev P, Lukyanov S, Kamensky V, Zagaynova E.
    Towards PDT with Genetically Encoded Photosensitizer KillerRed: A Comparison of Continuous and Pulsed Laser Regimens in an Animal Tumor Model.
    PLoS One. 2015 Dec 11;10(12):e0144617 doi: 10.1371/journal.pone.0144617
    pmid: 26657001
  • Warren EA, Netterfield TS, Sarkar S, Kemp ML, Payne CK.
    Spatially-resolved intracellular sensing of hydrogen peroxide in living cells.
    Sci Rep. 2015 Nov 20;5:16929 doi: 10.1038/srep16929
    pmid: 26585385
  • Cho SJ, Kim SY, Jeong HC, Cheong H, Kim D, Park SJ, Choi JJ, Kim H, Chung HM, Moon SH, Cha HJ.
    Repair of Ischemic Injury by Pluripotent Stem Cell Based Cell Therapy without Teratoma through Selective Photosensitivity.
    Stem Cell Reports. 2015 Nov 11;pii: S2213-6711(15)00301-X. doi: 10.1016/j.stemcr.2015.10.004. [Epub ahead of print]
    pmid: 26584542
  • Balalaeva IV, Sokolova EA, Brilkina AA, Deyev SM, Petrov RV.
    Far-red fluorescent cell line for preclinical study of HER2-targeted agents.
    Dokl Biochem Biophys. 2015 Nov;465(1):410-2 doi: 10.1134/S1607672915060174
    pmid: 26728737
  • Forkink M, Basit F, Teixeira J, Swarts HG, Koopman WJ, Willems PH.
    Complex I and complex III inhibition specifically increase cytosolic hydrogen peroxide levels without inducing oxidative stress in HEK293 cells.
    Redox Biol. 2015 Oct 23;6:607-616 doi: 10.1016/j.redox.2015.09.003
    pmid: 26516986
  • Meng J, Hotard AL, Currier MG, Lee S, Stobart CC, Moore ML.
    Respiratory Syncytial Virus Attachment Glycoprotein Contribution to Infection Depends on the Specific Fusion Protein.
    J Virol. 2015 Oct 14;90(1):245-53 doi: 10.1128/JVI.02140-15
    pmid: 26468535
  • Zdobnova T, Sokolova E, Stremovskiy O, Karpenko D, Telford W, Turchin I, Balalaeva I, Deyev S.
    A novel far-red fluorescent xenograft model of ovarian carcinoma for preclinical evaluation of HER2-targeted immunotoxins.
    Oncotarget. 2015 Oct 13;6(31):30919-28 doi: 10.18632/oncotarget.5130
    pmid: 26436696
  • Mizuta Y, Kurihara D, Higashiyama T.
    Two-photon imaging with longer wavelength excitation in intact Arabidopsis tissues.
    Protoplasma. 2015 Sep;252(5):1231-40 doi: 10.1007/s00709-014-0754-5
    pmid: 25588923
  • Yanaka Y, Muramatsu T, Uetake H, Kozaki KI, Inazawa J.
    miR-544a induces epithelial-mesenchymal transition through the activation of WNT signaling pathway in gastric cancer.
    Carcinogenesis. 2015 Aug 11;pii: bgv106. [Epub ahead of print]
    pmid: 26264654
  • Beilharz K, van Raaphorst R, Kjos M, Veening JW.
    Red fluorescent proteins for gene expression and protein localization studies in Streptococcus pneumoniae and efficient transformation with Gibson assembled DNA.
    Appl Environ Microbiol. 2015 Aug 7;pii: AEM.02033-15. [Epub ahead of print]
    pmid: 26253684
  • Nordgren M, Francisco T, Lismont C, Hennebel L, Brees C, Wang B, Van Veldhoven PP, Azevedo JE, Fransen M.
    Export-deficient monoubiquitinated PEX5 triggers peroxisome removal in SV40 large T antigen-transformed mouse embryonic fibroblasts.
    Autophagy. 2015 Aug 3;11(8):1326-40 doi: 10.1080/15548627.2015.1061846
    pmid: 26086376
  • Yuzhakova DV, Shirmanova MV, Serebrovskaya EO, Lukyanov KA, Druzhkova IN, Shakhov BE, Lukyanov SA, Zagaynova EV.
    CT26 murine colon carcinoma expressing the red fluorescent protein KillerRed as a highly immunogenic tumor model.
    J Biomed Opt. 2015 Aug 1;20(8):88002 doi: 10.1117/1.JBO.20.8.088002
    pmid: 26277828
  • Sun L, Tan R, Xu J, LaFace J, Gao Y, Xiao Y, Attar M, Neumann C, Li GM, Su B, Liu Y, Nakajima S, Levine AS, Lan L.
    Targeted DNA damage at individual telomeres disrupts their integrity and triggers cell death.
    Nucleic Acids Res. 2015 Jul 27;43(13):6334-47 doi: 10.1093/nar/gkv598
    pmid: 26082495
  • Yan L, Kanada M, Zhang J, Okazaki S, Terakawa S.
    Photodynamic Treatment of Tumor with Bacteria Expressing KillerRed.
    PLoS One. 2015 Jul 27;10(7):e0131518 doi: 10.1371/journal.pone.0131518
    pmid: 26213989
  • Goryashchenko AS, Khrenova MG, Bochkova AA, Ivashina TV, Vinokurov LM, Savitsky AP.
    Genetically Encoded FRET-Sensor Based on Terbium Chelate and Red Fluorescent Protein for Detection of Caspase-3 Activity.
    Int J Mol Sci. 2015 Jul 22;16(7):16642-54 doi: 10.3390/ijms160716642
    pmid: 26204836
  • Manoharan GB, Enkvist E, Kasari M, Viht K, Zenn M, Prinz A, Filhol O, Herberg FW, Uri A.
    FRET-based screening assay using small-molecule photoluminescent probes in lysate of cells overexpressing RFP-fused protein kinases.
    Anal Biochem. 2015 Jul 15;481:10-7 doi: 10.1016/j.ab.2015.04.009
    pmid: 25866074
  • Iram SH, Gruber SJ, Raguimova ON, Thomas DD, Robia SL.
    ATP-Binding Cassette Transporter Structure Changes Detected by Intramolecular Fluorescence Energy Transfer for High-Throughput Screening.
    Mol Pharmacol. 2015 Jul;88(1):84-94 doi: 10.1124/mol.114.096792
    pmid: 25924616
  • Walbrecq G, Wang B, Becker S, Hannotiau A, Fransen M, Knoops B.
    Antioxidant cytoprotection by peroxisomal peroxiredoxin-5.
    Free Radic Biol Med. 2015 Jul;84:215-26 doi: 10.1016/j.freeradbiomed.2015.02.032
    pmid: 25772011
  • Kinnear E, Caproni LJ, Tregoning JS.
    A Comparison of Red Fluorescent Proteins to Model DNA Vaccine Expression by Whole Animal In Vivo Imaging.
    PLoS One. 2015 Jun 19;10(6):e0130375 doi: 10.1371/journal.pone.0130375
    pmid: 26091084
  • Luker KE, Pata P, Shemiakina II, Pereverzeva A, Stacer AC, Shcherbo DS, Pletnev VZ, Skolnaja M, Lukyanov KA, Luker GD, Pata I, Chudakov DM.
    Comparative study reveals better far-red fluorescent protein for whole body imaging.
    Sci Rep. 2015 Jun 2;5:10332 doi: 10.1038/srep10332
    pmid: 26035795
  • Carrel D, Hernandez K, Kwon M, Mau C, Trivedi MP, Brzustowicz LM, Firestein BL.
    Nitric oxide synthase 1 adaptor protein, a protein implicated in schizophrenia, controls radial migration of cortical neurons.
    Biol Psychiatry. 2015 Jun 1;77(11):969-78 doi: 10.1016/j.biopsych.2014.10.016
    pmid: 25542305
  • Schuster M, Kilaru S, Guo M, Sommerauer M, Lin C, Steinberg G.
    Red fluorescent proteins for imaging Zymoseptoria tritici during invasion of wheat.
    Fungal Genet Biol. 2015 Jun;79:132-40 doi: 10.1016/j.fgb.2015.03.025
    pmid: 26092800
  • Kammonen JI, Smolander OP, Sipilä T, Overmyer K, Auvinen P, Paulin L.
    Increased transcriptome sequencing efficiency with modified Mint-2 digestion-ligation protocol.
    Anal Biochem. 2015 May 15;477:38-40 doi: 10.1016/j.ab.2014.12.001
    pmid: 25513723
  • Mishina NM, Mishin AS, Belyaev Y, Bogdanova EA, Lukyanov S, Schultz C, Belousov VV.
    Live-Cell STED Microscopy with Genetically Encoded Biosensor.
    Nano Lett. 2015 May 13;15(5):2928-32 doi: 10.1021/nl504710z
    pmid: 25871892
  • Plessner M, Melak M, Chinchilla P, Baarlink C, Grosse R.
    Nuclear F-actin formation and reorganization upon cell spreading.
    J Biol Chem. 2015 May 1;290(18):11209-16 doi: 10.1074/jbc.M114.627166
    pmid: 25759381
  • Detert Oude Weme RG, Kovács ÁT, de Jong SJ, Veening JW, Siebring J, Kuipers OP.
    Single cell FRET analysis for the identification of optimal FRET-pairs in Bacillus subtilis using a prototype MEM-FLIM system.
    PLoS One. 2015 Apr 17;10(4):e0123239 doi: 10.1371/journal.pone.0123239
    pmid: 25886351
  • Zhu MH, Sung TS, O'Driscoll K, Koh SD, Sanders KM.
    Intracellular Ca(2+) release from endoplasmic reticulum regulates slow wave currents and pacemaker activity of interstitial cells of Cajal.
    Am J Physiol Cell Physiol. 2015 Apr 15;308(8):C608-20 doi: 10.1152/ajpcell.00360.2014
    pmid: 25631870
  • Tseng SJ, Liao ZX, Kao SH, Zeng YF, Huang KY, Li HJ, Yang CL, Deng YF, Huang CF, Yang SC, Yang PC, Kempson IM.
    Highly specific in vivo gene delivery for p53-mediated apoptosis and genetic photodynamic therapies of tumour.
    Nat Commun. 2015 Mar 5;6:6456 doi: 10.1038/ncomms7456
    pmid: 25739372
  • Lim JB, Sikes HD.
    Use of a genetically encoded hydrogen peroxide sensor for whole cell screening of enzyme activity.
    Protein Eng Des Sel. 2015 Mar;28(3):79-83 doi: 10.1093/protein/gzv003
    pmid: 25691762
  • Pereverzev AP, Gurskaya NG, Ermakova GV, Kudryavtseva EI, Markina NM, Kotlobay AA, Lukyanov SA, Zaraisky AG, Lukyanov KA.
    Method for quantitative analysis of nonsense-mediated mRNA decay at the single cell level.
    Sci Rep. 2015 Jan 12;5:7729 doi: 10.1038/srep07729
    pmid: 25578556
  • Hernández-Barrera A, Velarde-Buendía A, Zepeda I, Sanchez F, Quinto C, Sánchez-Lopez R, Cheung AY, Wu HM, Cardenas L.
    Hyper, a hydrogen peroxide sensor, indicates the sensitivity of the Arabidopsis root elongation zone to aluminum treatment.
    Sensors (Basel). 2015 Jan 6;15(1):855-67 doi: 10.3390/s150100855
    pmid: 25569758
  • Khrenova M, Topol I, Collins J, Nemukhin A.
    Estimating orientation factors in the FRET theory of fluorescent proteins: the TagRFP-KFP pair and beyond.
    Biophys J. 2015 Jan 6;108(1):126-32 doi: 10.1016/j.bpj.2014.11.1859
    pmid: 25564859
  • Gehrmann W, Würdemann W, Plötz T, Jörns A, Lenzen S, Elsner M.
    Antagonism Between Saturated and Unsaturated Fatty Acids in ROS Mediated Lipotoxicity in Rat Insulin-Producing Cells.
    Cell Physiol Biochem. 2015;36(3):852-65 doi: 10.1159/000430261
    pmid: 26044490
  • Suzuki S, Tsukiyama T, Kaneko T, Imai H, Minami N.
    A hyperactive piggyBac transposon system is an easy-to-implement method for introducing foreign genes into mouse preimplantation embryos.
    J Reprod Dev. 2015;61(3):241-4 doi: 10.1262/jrd.2014-157
    pmid: 25740401
2014
  • Zhang X, Wang D, Zhao S, Shen Z.
    A double built-in containment strategy for production of recombinant proteins in transgenic rice.
    PLoS One. 2014 Dec 22;9(12):e115459 doi: 10.1371/journal.pone.0115459
    pmid: 25531447
  • Cobine CA, Sotherton AG, Peri LE, Sanders KM, Ward SM, Keef KD.
    Nitrergic neuromuscular transmission in the mouse internal anal sphincter is accomplished by multiple pathways and postjunctional effector cells.
    Am J Physiol Gastrointest Liver Physiol. 2014 Dec 1;307(11):G1057-72 doi: 10.1152/ajpgi.00331.2014
    pmid: 25301187
  • Huang BK, Sikes HD.
    Quantifying intracellular hydrogen peroxide perturbations in terms of concentration.
    Redox Biol. 2014 Aug 6;2C:955-962 doi: 10.1016/j.redox.2014.08.001
    pmid: 25460730
  • Mikhaylova M, Karpova A, Bär J, Bethge P, Yuanxiang P, Chen Y, Zuschratter W, Behnisch T, Kreutz MR.
    Cellular distribution of the NMDA-receptor activated synapto-nuclear messenger Jacob in the rat brain.
    Brain Struct Funct. 2014 May;219(3):843-60 doi: 10.1007/s00429-013-0539-1
    pmid: 23539133
  • Ryazantsev DY, Rogozhin EA, Dimitrieva TV, Drobyazina PE, Khadeeva NV, Egorov TA, Grishin EV, Zavriev SK.
    A novel hairpin-like antimicrobial peptide from barnyard grass (Echinochloa crusgalli L.) seeds: Structure-functional and molecular-genetics characterization.
    Biochimie. 2014 Apr;99:63-70 doi: 10.1016/j.biochi.2013.11.005
    pmid: 24275143
  • Cheng WY, Larson JM, Samet JM.
    Monitoring intracellular oxidative events using dynamic spectral unmixing microscopy.
    Methods. 2014 Mar 15;66(2):345-52 doi: 10.1016/j.ymeth.2013.06.008
    pmid: 23816786
  • Matlashov MV, Belousov VV, Enikolopov G.
    How Much H2O2 Is Produced by Recombinant D-Amino Acid Oxidase in Mammalian Cells?
    Antioxid Redox Signal. 2014 Mar 1;20(7):1039-44 doi: 10.1089/ars.2013.5618
    pmid: 24020354
  • Lan L, Nakajima S, Wei L, Sun L, Hsieh CL, Sobol RW, Bruchez M, Van Houten B, Yasui A, Levine AS.
    Novel method for site-specific induction of oxidative DNA damage reveals differences in recruitment of repair proteins to heterochromatin and euchromatin.
    Nucleic Acids Res. 2014 Feb;42(4):2330-45 doi: 10.1093/nar/gkt1233
    pmid: 24293652
  • Lukyanov KA, Belousov VV.
    Genetically encoded fluorescent redox sensors.
    Biochim Biophys Acta. 2014 Feb;1840(2):745-56 doi: 10.1016/j.bbagen.2013.05.030
    pmid: 23726987
  • Kaludercic N, Carpi A, Nagayama T, Sivakumaran V, Zhu G, Lai EW, Bedja D, De Mario A, Chen K, Gabrielson KL, Lindsey ML, Pacak K, Takimoto E, Shih JC, Kass DA, Di Lisa F, Paolocci N.
    Monoamine Oxidase B Prompts Mitochondrial and Cardiac Dysfunction in Pressure Overloaded Hearts.
    Antioxid Redox Signal. 2014 Jan 10;20(2):267-80 doi: 10.1089/ars.2012.4616
    pmid: 23581564
  • Sergeeva IA, Hooijkaas IB, Van Der Made I, Jong WM, Creemers EE, Christoffels VM.
    A transgenic mouse model for the simultaneous monitoring of ANF and BNP gene activity during heart development and disease.
    Cardiovasc Res. 2014 Jan 1;101(1):78-86 doi: 10.1093/cvr/cvt228
    pmid: 24104878
  • Jarvela T, Linstedt AD.
    Isoform-specific tethering links the Golgi ribbon to maintain compartmentalization.
    Mol Biol Cell. 2014 Jan;25(1):133-44 doi: 10.1091/mbc.E13-07-0395
    pmid: 24227884
  • Liao ZX, Li YC, Lu HM, Sung HW.
    A genetically-encoded KillerRed protein as an intrinsically generated photosensitizer for photodynamic therapy.
    Biomaterials. 2014 Jan;35(1):500-8 doi: 10.1016/j.biomaterials.2013.09.075
    pmid: 24112805
  • Hajizadeh-Sikaroodi S, Hosseini A, Fallah A, Estiri H, Noormohammadi Z, Salehi M, Ghaderian SM, Akhavan Niaki H, Soleimani M, Kazemi B.
    Lentiviral Mediating Genetic Engineered Mesenchymal Stem Cells for Releasing IL-27 as a Gene Therapy Approach for Autoimmune Diseases.
    Cell J. 2014;16(3):255-62
    pmid: 24611150
2013
  • Donai K, Kuroda K, Guo Y, So KH, Sone H, Kobayashi M, Nishimori K, Fukuda T.
    Establishment of a reporter system to monitor silencing status in induced pluripotent stem cell lines.
    Anal Biochem. 2013 Dec 1;443(1):104-12 doi: 10.1016/j.ab.2013.08.014
    pmid: 23973628
  • Durymanov MO, Slastnikova TA, Kuzmich AI, Khramtsov YV, Ulasov AV, Rosenkranz AA, Egorov SY, Sverdlov ED, Sobolev AS.
    Microdistribution of MC1R-targeted polyplexes in murine melanoma tumor tissue.
    Biomaterials. 2013 Dec;34(38):10209-16 doi: 10.1016/j.biomaterials.2013.08.076
    pmid: 24075405
  • Kruzel ML, Actor JK, Zimecki M, Wise J, Płoszaj P, Mirza S, Kruzel M, Hwang SA, Ba X, Boldogh I.
    Novel recombinant human lactoferrin: Differential activation of oxidative stress related gene expression.
    J Biotechnol. 2013 Dec;168(4):666-75 doi: 10.1016/j.jbiotec.2013.09.011
    pmid: 24070904
  • Matsui M, Chu Y, Zhang H, Gagnon KT, Shaikh S, Kuchimanchi S, Manoharan M, Corey DR, Janowski BA.
    Promoter RNA links transcriptional regulation of inflammatory pathway genes.
    Nucleic Acids Res. 2013 Dec;41(22):10086-109 doi: 10.1093/nar/gkt777
    pmid: 23999091
  • Wang B, Van Veldhoven PP, Brees C, Rubio N, Nordgren M, Apanasets O, Kunze M, Baes M, Agostinis P, Fransen M.
    Mitochondria are targets for peroxisome-derived oxidative stress in cultured mammalian cells.
    Free Radic Biol Med. 2013 Dec;65:882-94 doi: 10.1016/j.freeradbiomed.2013.08.173
    pmid: 23988789
  • Suntsova M, Gogvadze EV, Salozhin S, Gaifullin N, Eroshkin F, Dmitriev SE, Martynova N, Kulikov K, Malakhova G, Tukhbatova G, Bolshakov AP, Ghilarov D, Garazha A, Aliper A, Cantor CR, Solokhin Y, Roumiantsev S, Balaban P, Zhavoronkov A, Buzdin A.
    Human-specific endogenous retroviral insert serves as an enhancer for the schizophrenia-linked gene PRODH.
    Proc Natl Acad Sci U S A. 2013 Nov 26;110(48):19472-7 doi: 10.1073/pnas.1318172110
    pmid: 24218577
  • Yang Y, Xiang K, Yang YX, Wang YW, Zhang X, Cui Y, Wang H, Zhu QQ, Fan L, Liu Y, Cao A.
    An individually coated near-infrared fluorescent protein as a safe and robust nanoprobe for in vivo imaging.
    Nanoscale. 2013 Nov 7;5(21):10345-52 doi: 10.1039/c3nr02508j
    pmid: 24056841
  • Bertolotti M, Bestetti S, García-Manteiga JM, Medraño-Fernandez I, Dal Mas A, Malosio ML, Sitia R.
    Tyrosine kinase signal modulation: a matter of H2O2 membrane permeability?
    Antioxid Redox Signal. 2013 Nov 1;19(13):1447-51 doi: 10.1089/ars.2013.5330
    pmid: 23541115
  • McMillan SC, Xu ZT, Zhang J, Teh C, Korzh V, Trudeau VL, Akimenko MA.
    Regeneration of breeding tubercles on zebrafish pectoral fins requires androgens and two waves of revascularization.
    Development. 2013 Nov;140(21):4323-34 doi: 10.1073/pnas.1104097108
    pmid: 24089472
  • Ryumina AP, Serebrovskaya EO, Shirmanova MV, Snopova LB, Kuznetsova MM, Turchin IV, Ignatova NI, Klementieva NV, Fradkov AF, Shakhov BE, Zagaynova EV, Lukyanov KA, Lukyanov SA.
    Flavoprotein miniSOG as a genetically encoded photosensitizer for cancer cells.
    Biochim Biophys Acta. 2013 Nov;1830(11):5059-67 doi: 10.1016/j.bbagen.2013.07.015
    pmid: 23876295
  • Williams DC, Bejjani RE, Ramirez PM, Coakley S, Kim SA, Lee H, Wen Q, Samuel A, Lu H, Hilliard MA, Hammarlund M.
    Rapid and permanent neuronal inactivation in vivo via subcellular generation of reactive oxygen with the use of KillerRed.
    Cell Rep. 2013 Oct 31;5(2):553-63 doi: 10.1016/j.celrep.2013.09.023
    pmid: 24209746
  • Koczurkiewicz P, Podolak I, Skrzeczyńska-Moncznik J, Sarna M, Wójcik KA, Ryszawy D, Galanty A, Lasota S, Madeja Z, Czyż J, Michalik M.
    Triterpene saponosides from Lysimachia ciliata differentially attenuate invasive potential of prostate cancer cells.
    Chem Biol Interact. 2013 Oct 25;206(1):6-17 doi: 10.1016/j.cbi.2013.08.003
    pmid: 23954719
  • Kopek BG, Shtengel G, Grimm JB, Clayton DA, Hess HF.
    Correlative photoactivated localization and scanning electron microscopy.
    PLoS One. 2013 Oct 25;8(10):e77209 doi: 10.1371/journal.pone.0077209
    pmid: 24204771
  • Takano M, Tashiro E, Kitamura A, Maita H, Iguchi-Ariga SM, Kinjo M, Ariga H.
    Prefoldin prevents aggregation of α-synuclein.
    Brain Res. 2013 Oct 25;pii: S0006-8993(13)01425-X. doi: 10.1016/j.brainres.2013.10.034.
    pmid: 24513251
  • Schwank G, Andersson-Rolf A, Koo BK, Sasaki N, Clevers H.
    Generation of BAC transgenic epithelial organoids.
    PLoS One. 2013 Oct 18;8(10):e76871 doi: 10.1371/journal.pone.0076871
    pmid: 24204693
  • Rendl M, Brandstetter T, Rühe J.
    Time-resolved analysis of biological reactions based on heterogeneous assays in liquid plugs of nanoliter volume.
    Anal Chem. 2013 Oct 15;85(20):9469-77 doi: 10.1021/ac401752j
    pmid: 24083685
  • Ronen M, Shalaby S, Horwitz BA.
    Role of the transcription factor ChAP1 in cytoplasmic redox homeostasis: imaging with a genetically encoded sensor in the maize pathogen Cochliobolus heterostrophus.
    Mol Plant Pathol. 2013 Oct;14(8):786-90 doi: 10.1111/mpp.12047
    pmid: 23745603
  • Zhapparova ON, Fokin AI, Vorobyeva NE, Bryantseva SA, Nadezhdina ES.
    Ste20-like protein kinase SLK (LOSK) regulates microtubule organization by targeting dynactin to the centrosome.
    Mol Biol Cell. 2013 Oct;24(20):3205-14 doi: 10.1091/mbc.E13-03-0137
    pmid: 23985322
  • Byrne LC, Khalid F, Lee T, Zin EA, Greenberg KP, Visel M, Schaffer DV, Flannery JG.
    AAV-mediated, optogenetic ablation of MГјller Glia leads to structural and functional changes in the mouse retina.
    PLoS One. 2013 Sep 27;8(9):e76075 doi: 10.1371/journal.pone.0076075
    pmid: 24086689
  • Rosenfeld GE, Mercer EJ, Mason CE, Evans T.
    Small heat shock proteins Hspb7 and Hspb12 regulate early steps of cardiac morphogenesis.
    Dev Biol. 2013 Sep 15;381(2):389-400 doi: 10.1016/j.ydbio.2013.06.025
    pmid: 23850773
  • Yu LN, Zhang QL, Li X, Hua X, Cui YM, Zhang NJ, Liao WT, Ding YQ.
    Tiam1 transgenic mice display increased tumor invasive and metastatic potential of colorectal cancer after 1,2-dimethylhydrazine treatment.
    PLoS One. 2013 Sep 12;8(9):e73077 doi: 10.1371/journal.pone.0073077
    pmid: 24069171
  • Rowland DC, Weible AP, Wickersham IR, Wu H, Mayford M, Witter MP, Kentros CG.
    Transgenically targeted rabies virus demonstrates a major monosynaptic projection from hippocampal area CA2 to medial entorhinal layer II neurons.
    J Neurosci. 2013 Sep 11;33(37):14889-98 doi: 10.1523/JNEUROSCI.1046-13.2013
    pmid: 24027288
  • Niescier RF, Chang KT, Min KT.
    Miro, MCU, and calcium: bridging our understanding of mitochondrial movement in axons.
    Front Cell Neurosci. 2013 Sep 10;7:148 doi: 10.3389/fncel.2013.00148
    pmid: 24058334
  • Wang H, Chen NG, Minev BR, Zimmermann M, Aguilar RJ, Zhang Q, Sturm JB, Fend F, Yu YA, Cappello J, Lauer UM, Szalay AA.
    Optical detection and virotherapy of live metastatic tumor cells in body fluids with vaccinia strains.
    PLoS One. 2013 Sep 3;8(9):e71105 doi: 10.1371/journal.pone.0071105
    pmid: 24019862
  • Eijlander RT, Kuipers OP.
    Live-cell imaging tool optimization to study gene expression levels and dynamics in single cells of Bacillus cereus.
    Appl Environ Microbiol. 2013 Sep;79(18):5643-51 doi: 10.1128/AEM.01347-13
    pmid: 23851094
  • Shaw JL, Chang KT.
    Nebula/DSCR1 Upregulation Delays Neurodegeneration and Protects against APP-Induced Axonal Transport Defects by Restoring Calcineurin and GSK-3β Signaling.
    PLoS Genet. 2013 Sep;9(9):e1003792 doi: 10.1371/journal.pgen.1003792
    pmid: 24086147
  • Vogt A, Scull MA, Friling T, Horwitz JA, Donovan BM, Dorner M, Gerold G, Labitt RN, Rice CM, Ploss A.
    Recapitulation of the hepatitis C virus life-cycle in engineered murine cell lines.
    Virology. 2013 Sep;444(1-2):1-11 doi: 10.1016/j.virol.2013.05.036
    pmid: 23777661
  • Xiang Z, Ren H, Hu YS, Coin I, Wei J, Cang H, Wang L.
    Adding an unnatural covalent bond to proteins through proximity-enhanced bioreactivity.
    Nat Methods. 2013 Sep;10(9):885-8 doi: 10.1038/nmeth.2595
    pmid: 23913257
  • Kobayashi J, Shidara H, Morisawa Y, Kawakami M, Tanahashi Y, Hotta K, Oka K.
    A method for selective ablation of neurons in C. elegans using the phototoxic fluorescent protein, KillerRed.
    Neurosci Lett. 2013 Aug 26;548:261-4 doi: 10.1016/j.neulet.2013.05.053
    pmid: 23748043
  • Enyedi B, Zana M, Donkó Á, Geiszt M.
    Spatial and temporal analysis of NADPH oxidase-generated hydrogen peroxide signals by novel fluorescent reporter proteins.
    Antioxid Redox Signal. 2013 Aug 20;19(6):523-34 doi: 10.1089/ars.2012.4594
    pmid: 23121369
  • Gaytán P, Roldán-Salgado A.
    Elimination of redundant and stop codons during the chemical synthesis of degenerate oligonucleotides. Combinatorial testing on the chromophore region of the red fluorescent protein mKate.
    ACS Synth Biol. 2013 Aug 16;2(8):453-62 doi: 10.1021/sb3001326
    pmid: 23654278
  • Guess MG, Barthel KK, Pugach EK, Leinwand LA.
    Measuring microRNA reporter activity in skeletal muscle using hydrodynamic limb vein injection of plasmid DNA combined with in vivo imaging.
    Skelet Muscle. 2013 Aug 1;3(1):19 doi: 10.1186/2044-5040-3-19
    pmid: 23915674
  • Grisham MB.
    Methods to detect hydrogen peroxide in living cells: Possibilities and pitfalls.
    Comp Biochem Physiol A Mol Integr Physiol. 2013 Aug;165(4):429-38 doi: 10.1016/j.cbpa.2013.02.003
    pmid: 23396306
  • Espinosa A, Campos C, Díaz-Vegas A, Galgani JE, Juretic N, Osorio-Fuentealba C, Bucarey JL, Tapia G, Valenzuela R, Contreras-Ferrat A, Llanos P, Jaimovich E.
    Insulin-dependent H2O2 production is higher in muscle fibers of mice fed with a high-fat diet.
    Int J Mol Sci. 2013 Jul 29;14(8):15740-54 doi: 10.3390/ijms140815740
    pmid: 23899788
  • Zhdanov AV, Waters AH, Golubeva AV, Dmitriev RI, Papkovsky DB.
    Availability of the key metabolic substrates dictates the respiratory response of cancer cells to the mitochondrial uncoupling.
    Biochim Biophys Acta. 2013 Jul 23;1837(1):51-62 doi: 10.1016/j.bbabio.2013.07.008
    pmid: 23891695
  • Matus S, Lopez E, Valenzuela V, Nassif M, Hetz C.
    Functional contribution of the transcription factor ATF4 to the pathogenesis of amyotrophic lateral sclerosis.
    PLoS One. 2013 Jul 18;8(7):e66672 doi: 10.1371/journal.pone.0066672
    pmid: 23874395
  • Loots GG, Bergmann A, Hum NR, Oldenburg CE, Wills AE, Hu N, Ovcharenko I, Harland RM.
    Interrogating transcriptional regulatory sequences in Tol2-mediated Xenopus transgenics.
    PLoS One. 2013 Jul 16;8(7):e68548 doi: 10.1371/journal.pone.0068548
    pmid: 23874664
  • Sharma A, Larue RC, Plumb MR, Malani N, Male F, Slaughter A, Kessl JJ, Shkriabai N, Coward E, Aiyer SS, Green PL, Wu L, Roth MJ, Bushman FD, Kvaratskhelia M.
    BET proteins promote efficient murine leukemia virus integration at transcription start sites.
    Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):12036-41 doi: 10.1073/pnas.1307157110
    pmid: 23818621
  • Brenner MH, Cai D, Swanson JA, Ogilvie JP.
    Two-photon imaging of multiple fluorescent proteins by phase-shaping and linear unmixing with a single broadband laser.
    Opt Express. 2013 Jul 15;21(14):17256-64 doi: 10.1364/OE.21.017256
    pmid: 23938572
  • Waldeck W, Mueller G, Glatting KH, Hotz-Wagenblatt A, Diessl N, Chotewutmonti S, Langowski J, Semmler W, Wiessler M, Braun K.
    Spatial localization of genes determined by intranuclear DNA fragmentation with the fusion proteins lamin KRED and histone KRED und visible light.
    Int J Med Sci. 2013 Jul 7;10(9):1136-48 doi: 10.7150/ijms.6121
    pmid: 23869190
  • Lu D, Han C, Wu T.
    15-hydroxyprostaglandin dehydrogenase-derived 15-keto-prostaglandin E2 inhibits cholangiocarcinoma cell growth through interaction with peroxisome proliferator-activated receptor-γ, SMAD2/3, and TAP63 proteins.
    J Biol Chem. 2013 Jul 5;288(27):19484-502 doi: 10.1074/jbc.M113.453886
    pmid: 23687300
  • Lee S, Lim WA, Thorn KS.
    Improved Blue, Green, and Red Fluorescent Protein Tagging Vectors for S. cerevisiae.
    PLoS One. 2013 Jul 2;8(7):e67902 doi: 10.1371/journal.pone.0067902
    pmid: 23844123
  • Knorr DA, Bock A, Brentjens RJ, Kaufman DS.
    Engineered human embryonic stem cell-derived lymphocytes to study in vivo trafficking and immunotherapy.
    Stem Cells Dev. 2013 Jul 1;22(13):1861-9 doi: 10.1089/scd.2012.0608
    pmid: 23421330
  • Vitriol EA, Wise AL, Berginski ME, Bamburg JR, Zheng JQ.
    Instantaneous inactivation of cofilin reveals its function of F-actin disassembly in lamellipodia.
    Mol Biol Cell. 2013 Jul;24(14):2238-47 doi: 10.1091/mbc.E13-03-0156
    pmid: 23676663
  • Alam R, Zylstra J, Fontaine DM, Branchini BR, Maye MM.
    Novel multistep BRET-FRET energy transfer using nanoconjugates of firefly proteins, quantum dots, and red fluorescent proteins.
    Nanoscale. 2013 Jun 21;5(12):5303-6 doi: 10.1039/c3nr01842c
    pmid: 23685756
  • Cai D, Cohen KB, Luo T, Lichtman JW, Sanes JR.
    Improved tools for the Brainbow toolbox.
    Nat Methods. 2013 Jun;10(6):540-7
    pmid: 23866336
  • Pletneva NV, Pletnev VZ, Souslova E, Chudakov DM, Lukyanov S, Martynov VI, Arhipova S, Artemyev I, Wlodawer A, Dauter Z, Pletnev S.
    Yellow fluorescent protein phiYFPv (Phialidium): structure and structure-based mutagenesis.
    Acta Crystallogr D Biol Crystallogr. 2013 Jun;69(Pt 6):1005-12 doi: 10.1107/S0907444913004034
    pmid: 23695245
  • Vijftigschild LA, van der Ent CK, Beekman JM.
    A novel fluorescent sensor for measurement of CFTR function by flow cytometry.
    Cytometry A. 2013 Jun;83(6):576-84 doi: 10.1002/cyto.a.22275
    pmid: 23463616
  • Eremeeva EV, Markova SV, Vysotski ES.
    Highly active BRET-reporter based on yellow mutant of Renilla muelleri luciferase.
    Dokl Biochem Biophys. 2013 May-Jun;450(1):147-50 doi: 10.1134/S1607672913030095
    pmid: 23824457
  • Sun Q, Gao W, Loughran P, Shapiro R, Fan J, Billiar TR, Scott MJ.
    Caspase 1 activation is protective against hepatocyte cell death by up-regulating beclin 1 protein and mitochondrial autophagy in the setting of redox stress.
    J Biol Chem. 2013 May 31;288(22):15947-58 doi: 10.1074/jbc.M112.426791
    pmid: 23589298
  • Rivera-Molina F, Toomre D.
    Live-cell imaging of exocyst links its spatiotemporal dynamics to various stages of vesicle fusion.
    J Cell Biol. 2013 May 27;201(5):673-80 doi: 10.1083/jcb.201212103
    pmid: 23690179
  • Krylova I, Kumar RR, Kofoed EM, Schaufele F.
    A versatile, bar-coded nuclear marker/reporter for live cell fluorescent and multiplexed high content imaging.
    PLoS One. 2013 May 14;8(5):e63286 doi: 10.1371/journal.pone.0063286
    pmid: 23691010
  • Heo JM, Nielson JR, Dephoure N, Gygi SP, Rutter J.
    Intramolecular interactions control Vms1 translocation to damaged mitochondria.
    Mol Biol Cell. 2013 May;24(9):1263-73 doi: 10.1091/mbc.E13-02-0072
    pmid: 23468520
  • Pogorelko G, Lionetti V, Fursova O, Sundaram RM, Qi M, Whitham SA, Bogdanove AJ, Bellincampi D, Zabotina OA.
    Arabidopsis and Brachypodium distachyon transgenic plants expressing Aspergillus nidulans acetylesterases have decreased degree of polysaccharide acetylation and increased resistance to pathogens.
    Plant Physiol. 2013 May;162(1):9-23 doi: 10.1104/pp.113.214460
    pmid: 23463782
  • Martinelli R, Kamei M, Sage PT, Massol R, Varghese L, Sciuto T, Toporsian M, Dvorak AM, Kirchhausen T, Springer TA, Carman CV.
    Release of cellular tension signals self-restorative ventral lamellipodia to heal barrier micro-wounds.
    J Cell Biol. 2013 Apr 29;201(3):449-65 doi: 10.1083/jcb.201209077
    pmid: 23629967
  • Zheng X, Zinkevich NS, Gebremedhin D, Gauthier KM, Nishijima Y, Fang J, Wilcox DA, Campbell WB, Gutterman DD, Zhang DX.
    Arachidonic acid-induced dilation in human coronary arterioles: convergence of signaling mechanisms on endothelial TRPV4-mediated Ca2+ entry.
    J Am Heart Assoc. 2013 Apr 25;2(3):e000080 doi: 10.1161/JAHA.113.000080
    pmid: 23619744
  • Hajas G, Bacsi A, Aguilera-Aguirre L, Hegde ML, Tapas KH, Sur S, Radak Z, Ba X, Boldogh I.
    8-Oxoguanine DNA glycosylase-1 links DNA repair to cellular signaling via the activation of the small GTPase Rac1.
    Free Radic Biol Med. 2013 Apr 21;61C:384-394 doi: 10.1016/j.freeradbiomed.2013.04.011
    pmid: 23612479
  • Kim E, Gordonov T, Liu Y, Bentley WE, Payne GF.
    Reverse engineering to suggest biologically relevant redox activities of phenolic materials.
    ACS Chem Biol. 2013 Apr 19;8(4):716-24 doi: 10.1021/cb300605s
    pmid: 23320381
  • Erhart D, Zimmermann M, Jacques O, Wittwer MB, Ernst B, Constable E, Zvelebil M, Beaufils F, Wymann MP.
    Chemical development of intracellular protein heterodimerizers.
    Chem Biol. 2013 Apr 18;20(4):549-57 doi: 10.1016/j.chembiol.2013.03.010
    pmid: 23601644
  • Salnikova LE, Smelaya TV, Moroz VV, Golubev AM, Rubanovich AV.
    Host genetic risk factors for community-acquired pneumonia.
    Gene. 2013 Apr 15;518(2):449-56 doi: 10.1016/j.gene.2012.10.027
    pmid: 23107763
  • Mylle E, Codreanu MC, Boruc J, Russinova E.
    Emission spectra profiling of fluorescent proteins in living plant cells.
    Plant Methods. 2013 Apr 3;9(1):10 doi: 10.1186/1746-4811-9-10
    pmid: 23552272
  • Birk J, Meyer M, Aller I, Hansen HG, Odermatt A, Dick TP, Meyer AJ, Appenzeller-Herzog C.
    Endoplasmic reticulum: reduced and oxidized glutathione revisited.
    J Cell Sci. 2013 Apr 1;126(Pt 7):1604-17 doi: 10.1242/jcs.117218
    pmid: 23424194
  • Li N, You X, Chen T, Mackowiak SD, Friedländer MR, Weigt M, Du H, Gogol-Döring A, Chang Z, Dieterich C, Hu Y, Chen W.
    Global profiling of miRNAs and the hairpin precursors: insights into miRNA processing and novel miRNA discovery.
    Nucleic Acids Res. 2013 Apr 1;41(6):3619-34 doi: 10.1093/nar/gkt072
    pmid: 23396444
  • Andrio E, Marino D, Marmeys A, de Segonzac MD, Damiani I, Genre A, Huguet S, Frendo P, Puppo A, Pauly N.
    Hydrogen peroxide-regulated genes in the Medicago truncatula-Sinorhizobium meliloti symbiosis.
    New Phytol. 2013 Apr;198(1):179-89 doi: 10.1111/nph.12120
    pmid: 23347006
  • Bose JL, Fey PD, Bayles KW.
    Genetic tools to enhance the study of gene function and regulation in Staphylococcus aureus.
    Appl Environ Microbiol. 2013 Apr;79(7):2218-24 doi: 10.1128/AEM.00136-13
    pmid: 23354696
  • Klimenko OV, Shtilman MI.
    Transfection of Kasumi-1 cells with a new type of polymer carriers loaded with miR-155 and antago-miR-155.
    Cancer Gene Ther. 2013 Apr;20(4):237-41 doi: 10.1038/cgt.2013.11
    pmid: 23538486
  • Panieri E, Gogvadze V, Norberg E, Venkatesh R, Orrenius S, Zhivotovsky B.
    Reactive oxygen species generated in different compartments induce cell death, survival, or senescence.
    Free Radic Biol Med. 2013 Apr;57:176-87 doi: 10.1016/j.freeradbiomed.2012.12.024
    pmid: 23295411
  • Baskaev KK, Kholodenko RV, Malakhova GV, Gaĭfullin NM, Korzeneva EA, Suntsova MV, Buzdin AA.
    Experimental analysis of human specific protein coding open reading frame c11orf72.
    Bioorg Khim. 2013 Mar-Apr;39(2):151-8
    pmid: 23964515
  • Bilan DS, Pase L, Joosen L, Gorokhovatsky AY, Ermakova YG, Gadella TW, Grabher C, Schultz C, Lukyanov S, Belousov VV.
    HyPer-3: a genetically encoded H(2)O(2) probe with improved performance for ratiometric and fluorescence lifetime imaging.
    ACS Chem Biol. 2013 Mar 15;8(3):535-42 doi: 10.1021/cb300625g
    pmid: 23256573
  • Rask L, Fregil M, Høgdall E, Mitchelmore C, Eriksen J.
    Development of a metastatic fluorescent Lewis Lung carcinoma mouse model: Identification of mRNAs and microRNAs involved in tumor invasion.
    Gene. 2013 Mar 15;517(1):72-81 doi: 10.1016/j.gene.2012.12.083
    pmid: 23296057
  • Richard M, Boulin T, Robert VJ, Richmond JE, Bessereau JL.
    Biosynthesis of ionotropic acetylcholine receptors requires the evolutionarily conserved ER membrane complex.
    Proc Natl Acad Sci U S A. 2013 Mar 12;110(11):E1055-63 doi: 10.1073/pnas.1216154110
    pmid: 23431131
  • Kitaguchi T, Oya M, Wada Y, Tsuboi T, Miyawaki A.
    Extracellular calcium influx activates adenylate cyclase 1 and potentiates insulin secretion in MIN6 cells.
    Biochem J. 2013 Mar 1;450(2):365-73 doi: 10.1042/BJ20121022
    pmid: 23282092
  • Gaur NA, Hasek J, Brickner DG, Qiu H, Zhang F, Wong CM, Malcova I, Vasicova P, Brickner JH, Hinnebusch AG.
    Vps factors are required for efficient transcription elongation in budding yeast.
    Genetics. 2013 Mar;193(3):829-51 doi: 10.1534/genetics.112.146308
    pmid: 23335340
  • Gibbs-Flournoy EA, Simmons SO, Bromberg PA, Dick TP, Samet JM.
    Monitoring intracellular redox changes in ozone-exposed airway epithelial cells.
    Environ Health Perspect. 2013 Mar;121(3):312-7 doi: 10.1289/ehp.1206039
    pmid: 23249900
  • Losón OC, Song Z, Chen H, Chan DC.
    Fis1, Mff, MiD49, and MiD51 mediate Drp1 recruitment in mitochondrial fission.
    Mol Biol Cell. 2013 Mar;24(5):659-67 doi: 10.1091/mbc.E12-10-0721
    pmid: 23283981
  • Shirmanova MV, Serebrovskaya EO, Lukyanov KA, Snopova LB, Sirotkina MA, Prodanetz NN, Bugrova ML, Minakova EA, Turchin IV, Kamensky VA, Lukyanov SA, Zagaynova EV.
    Phototoxic effects of fluorescent protein KillerRed on tumor cells in mice.
    J Biophotonics. 2013 Mar;6(3):283-90 doi: 10.1002/jbio.201200056
    pmid: 22696211
  • Wasserberg D, Nicosia C, Tromp EE, Subramaniam V, Huskens J, Jonkheijm P.
    Oriented protein immobilization using covalent and noncovalent chemistry on a thiol-reactive self-reporting surface.
    J Am Chem Soc. 2013 Feb 27;135(8):3104-11 doi: 10.1021/ja3102133
    pmid: 23379762
  • Abe H, Wakabayashi R, Yonemura H, Yamada S, Goto M, Kamiya N.
    Split spy0128 as a potent scaffold for protein cross-linking and immobilization.
    Bioconjug Chem. 2013 Feb 20;24(2):242-50 doi: 10.1021/bc300606b
    pmid: 23350748
  • Didych DA, Shamsutdinov MF, Smirnov NA, Akopov SB, Monastyrskaya GS, Uspenskaya NY, Nikolaev LG, Sverdlov ED.
    Human PSENEN and U2AF1L4 genes are concertedly regulated by a genuine bidirectional promoter.
    Gene. 2013 Feb 15;515(1):34-41 doi: 10.1016/j.gene.2012.11.058
    pmid: 23246698
  • Arampatzi P, Gialitakis M, Makatounakis T, Papamatheakis J.
    Gene-specific factors determine mitotic expression and bookmarking via alternate regulatory elements.
    Nucleic Acids Res. 2013 Feb 1;41(4):2202-15 doi: 10.1093/nar/gks1365
    pmid: 23303784
  • Gandhirajan RK, Meng S, Chandramoorthy HC, Mallilankaraman K, Mancarella S, Gao H, Razmpour R, Yang XF, Houser SR, Chen J, Koch WJ, Wang H, Soboloff J, Gill DL, Madesh M.
    Blockade of NOX2 and STIM1 signaling limits lipopolysaccharide-induced vascular inflammation.
    J Clin Invest. 2013 Feb 1;123(2):887-902 doi: 10.1172/JCI65647
    pmid: 23348743
  • Bertz A, Ehlers JE, Wöhl-Bruhn S, Bunjes H, Gericke KH, Menzel H.
    Mobility of green fluorescent protein in hydrogel-based drug-delivery systems studied by anisotropy and fluorescence recovery after photobleaching.
    Macromol Biosci. 2013 Feb;13(2):215-26 doi: 10.1002/mabi.201200325
    pmid: 23255283
  • Brynildsen MP, Winkler JA, Spina CS, MacDonald IC, Collins JJ.
    Potentiating antibacterial activity by predictably enhancing endogenous microbial ROS production.
    Nat Biotechnol. 2013 Feb;31(2):160-5 doi: 10.1038/nbt.2458
    pmid: 23292609
  • Dragoi AM, Talman AM, Agaisse H.
    Bruton's tyrosine kinase regulates Shigella flexneri dissemination in HT-29 intestinal cells.
    Infect Immun. 2013 Feb;81(2):598-607 doi: 10.1128/IAI.00853-12
    pmid: 23230296
  • Love NR, Chen Y, Ishibashi S, Kritsiligkou P, Lea R, Koh Y, Gallop JL, Dorey K, Amaya E.
    Amputation-induced reactive oxygen species are required for successful Xenopus tadpole tail regeneration.
    Nat Cell Biol. 2013 Feb;15(2):222-8 doi: 10.1038/ncb2659
    pmid: 23314862
  • Yoshihama Y, Izumisawa Y, Akimoto K, Satoh Y, Mizushima T, Satoh K, Chida K, Takagawa R, Akiyama H, Ichikawa Y, Kunisaki C, Inayama Y, Endo I, Nagashima Y, Ohno S.
    High expression of KIBRA in low atypical protein kinase C-expressing gastric cancer correlates with lymphatic invasion and poor prognosis.
    Cancer Sci. 2013 Feb;104(2):259-65 doi: 10.1111/cas.12066
    pmid: 23163744
  • Kasymov V, Larina O, Castaldo C, Marina N, Patrushev M, Kasparov S, Gourine AV.
    Differential sensitivity of brainstem versus cortical astrocytes to changes in pH reveals functional regional specialization of astroglia.
    J Neurosci. 2013 Jan 9;33(2):435-41 doi: 10.1523/JNEUROSCI.2813-12.2013
    pmid: 23303924
  • Aseev LV, Chugunov AO, Efremov RG, Boni IV.
    A single missense mutation in a coiled-coil domain of Escherichia coli ribosomal protein S2 confers a thermosensitive phenotype that can be suppressed by ribosomal protein S1.
    J Bacteriol. 2013 Jan;195(1):95-104 doi: 10.1128/JB.01305-12
    pmid: 23104805
  • Barata AG, Dick TP.
    In vivo imaging of H2O2 production in Drosophila.
    Methods Enzymol. 2013;526:61-82 doi: 10.1016/B978-0-12-405883-5.00004-1
    pmid: 23791094
  • Bonekamp NA, Islinger M, Lázaro MG, Schrader M.
    Cytochemical detection of peroxisomes and mitochondria.
    Methods Mol Biol. 2013;931:467-82 doi: 10.1007/978-1-62703-056-4_24
    pmid: 23027018
  • Enyedi B, Niethammer P.
    H2O2: a chemoattractant?
    Methods Enzymol. 2013;528:237-55 doi: 10.1016/B978-0-12-405881-1.00014-8
    pmid: 23849869
  • Exposito-Rodriguez M, Laissue PP, Littlejohn GR, Smirnoff N, Mullineaux PM.
    The use of HyPer to examine spatial and temporal changes in H2O2 in high light-exposed plants.
    Methods Enzymol. 2013;527:185-201 doi: 10.1016/B978-0-12-405882-8.00010-6
    pmid: 23830632
  • Hernández-Barrera A, Quinto C, Johnson EA, Wu HM, Cheung AY, Cárdenas L.
    Using hyper as a molecular probe to visualize hydrogen peroxide in living plant cells: a method with virtually unlimited potential in plant biology.
    Methods Enzymol. 2013;527:275-90 doi: 10.1016/B978-0-12-405882-8.00015-5
    pmid: 23830637
  • Karlsson T, Bolshakova A, Magalhães MA, Loitto VM, Magnusson KE.
    Fluxes of water through aquaporin 9 weaken membrane-cytoskeleton anchorage and promote formation of membrane protrusions.
    PLoS One. 2013;8(4):e59901 doi: 10.1371/journal.pone.0059901
    pmid: 23573219
  • Kniss A, Lu H, Jones DP, Kemp ML.
    A microfluidic systems biology approach for live single-cell mitochondrial ROS imaging.
    Methods Enzymol. 2013;526:219-30 doi: 10.1016/B978-0-12-405883-5.00013-2
    pmid: 23791103
  • Lin CP, Kim C, Smith SO, Neiman AM.
    A highly redundant gene network controls assembly of the outer spore wall in S. cerevisiae.
    PLoS Genet. 2013;9(8):e1003700 doi: 10.1371/journal.pgen.1003700
    pmid: 23966878
  • Mishina NM, Markvicheva KN, Bilan DS, Matlashov ME, Shirmanova MV, Liebl D, Schultz C, Lukyanov S, Belousov VV.
    Visualization of intracellular hydrogen peroxide with HyPer, a genetically encoded fluorescent probe.
    Methods Enzymol. 2013;526:45-59 doi: 10.1016/B978-0-12-405883-5.00003-X
    pmid: 23791093
  • Mishina NM, Markvicheva KN, Fradkov AF, Zagaynova EV, Schultz C, Lukyanov S, Belousov VV.
    Imaging H2O2 microdomains in receptor tyrosine kinases signaling.
    Methods Enzymol. 2013;526:175-87 doi: 10.1016/B978-0-12-405883-5.00011-9
    pmid: 23791101
  • Садраддинова ЭР, Шестаков АИ, Абрамов СМ, Кошкарова ЛА, Митрофанова ТИ, Василов РГ, Нетрусов АИ.
    Скрининг микробных сообществ – продуцентов биоводорода.
    Вестник биотехнологии и физико-химической биологии. 2013;9(2):43-51 http://www.biorosinfo.ru/archive/journal/
  • Sartoretto JL, Kalwa H, Romero N, Michel T.
    In vivo imaging of nitric oxide and hydrogen peroxide in cardiac myocytes.
    Methods Enzymol. 2013;528:61-78 doi: 10.1016/B978-0-12-405881-1.00004-5
    pmid: 23849859
  • Tanaka Y, Shibahara K, Nakagawa T.
    Development of gateway binary vectors R4L1pGWB possessing the bialaphos resistance gene (bar) and the tunicamycin resistance gene as markers for promoter analysis in plants.
    Biosci Biotechnol Biochem. 2013;77(8):1795-7
    pmid: 23924715
  • Wickersham IR, Sullivan HA, Seung HS.
    Axonal and subcellular labelling using modified rabies viral vectors.
    Nat Commun. 2013;4:2332 doi: 10.1038/ncomms3332
    pmid: 23945836
  • Yang JY, Yang WY.
    Bit-by-bit autophagic removal of parkin-labelled mitochondria.
    Nat Commun. 2013;4:2428 doi: 10.1038/ncomms3428
    pmid: 24013556
2012
  • Viswanatha R, Ohouo PY, Smolka MB, Bretscher A.
    Local phosphocycling mediated by LOK/SLK restricts ezrin function to the apical aspect of epithelial cells.
    J Cell Biol. 2012 Dec 10;199(6):969-84 doi: 10.1083/jcb.201207047
    pmid: 23209304
  • Hotard AL, Shaikh FY, Lee S, Yan D, Teng MN, Plemper RK, Crowe JE Jr, Moore ML.
    A stabilized respiratory syncytial virus reverse genetics system amenable to recombination-mediated mutagenesis.
    Virology. 2012 Dec 5;434(1):129-36 doi: 10.1016/j.virol.2012.09.022
    pmid: 23062737
  • Sakurai C, Hashimoto H, Nakanishi H, Arai S, Wada Y, Sun-Wada GH, Wada I, Hatsuzawa K.
    SNAP-23 regulates phagosome formation and maturation in macrophages.
    Mol Biol Cell. 2012 Dec;23(24):4849-63 doi: 10.1091/mbc.E12-01-0069
    pmid: 23087210
  • Shemiakina II, Ermakova GV, Cranfill PJ, Baird MA, Evans RA, Souslova EA, Staroverov DB, Gorokhovatsky AY, Putintseva EV, Gorodnicheva TV, Chepurnykh TV, Strukova L, Lukyanov S, Zaraisky AG, Davidson MW, Chudakov DM, Shcherbo D.
    A monomeric red fluorescent protein with low cytotoxicity.
    Nat Commun. 2012 Nov 13;3:1204 doi: 10.1038/ncomms2208
    pmid: 23149748
  • Chai Y, Li W, Feng G, Yang Y, Wang X, Ou G.
    Live imaging of cellular dynamics during Caenorhabditis elegans postembryonic development.
    Nat Protoc. 2012 Nov 8;7(12):2090-102 doi: 10.1038/nprot.2012.128
    pmid: 23138350
  • Nefedova LN, Urusov FA, Romanova NI, Shmel'kova AO, Kim AI.
    Study of the transcriptional and transpositional activities of the Tirant retrotransposon in Drosophila melanogaster strains mutant for the flamenco locus.
    Genetika. 2012 Nov;48(11):1271-9 (in Russian)
    pmid: 23297482
  • de Rosny E, Carpentier P.
    GFP-Like Phototransformation Mechanisms in the Cytotoxic Fluorescent Protein KillerRed Unraveled by Structural and Spectroscopic Investigations.
    J Am Chem Soc. 2012 Oct 31;134(43):18015-21 doi: 10.1021/ja3073337
    pmid: 23025285
  • Wang Y, Nartiss Y, Steipe B, McQuibban GA, Kim PK.
    ROS-induced mitochondrial depolarization initiates PARK2/PARKIN-dependent mitochondrial degradation by autophagy.
    Autophagy. 2012 Oct 1;8(10):1462-76 doi: 10.4161/auto.21211
    pmid: 22889933
  • Pardo A, Stöcker M, Kampmeier F, Melmer G, Fischer R, Thepen T, Barth S.
    In vivo imaging of immunotoxin treatment using Katushka-transfected A-431 cells in a murine xenograft tumour model.
    Cancer Immunol Immunother. 2012 Oct;61(10):1617-26
    pmid: 22350071
  • Salomonnson E, Mihalko LA, Verkhusha VV, Luker KE, Luker GD.
    Cell-based and in vivo spectral analysis of fluorescent proteins for multiphoton microscopy.
    J Biomed Opt. 2012 Sep 1;17(9):96001 doi: 10.1117/1.JBO.17.9.096001
    pmid: 22975677
  • Pletnev S, Pletneva NV, Souslova EA, Chudakov DM, Lukyanov S, Wlodawer A, Dauter Z, Pletnev V.
    Structural basis for bathochromic shift of fluorescence in far-red fluorescent proteins eqFP650 and eqFP670.
    Acta Crystallogr D Biol Crystallogr. 2012 Sep;68(Pt 9):1088-97 doi: 10.1107/S0907444912020598
    pmid: 22948909
  • Viacheslavova AO, Mustafaev ON, Tiurin AA, Shimshilashvili KhR, Berdichevets IN, Shaiakhmetova DM, Goldenkov MA, Fadeev VS, Shelud'ko IuV, Goldenkova-Pavlova IV.
    Set of module vectors for stable or transient expression of heterologous genes in plants.
    Genetika. 2012 Sep;48(9):1046-56 (in Russian)
    pmid: 23113332
  • Shibuya T, Tsujimoto Y.
    Deleterious effects of mitochondrial ROS generated by KillerRed photodynamic action in human cell lines and C. elegans.
    J Photochem Photobiol B. 2012 Aug 22;117C:1-12 doi: 10.1016/j.jphotobiol.2012.08.005
    pmid: 23000754
  • Mishina NM, Bogeski I, Bolotin DA, Hoth M, Niemeyer BA, Schultz C, Zagaynova EV, Lukyanov S, Belousov VV.
    Can we see PIP(3) and hydrogen peroxide with a single probe?
    Antioxid Redox Signal. 2012 Aug 1;17(3):505-12 doi: 10.1089/ars.2012.4574
    pmid: 22369174
  • Zelmer A, Carroll P, Andreu N, Hagens K, Mahlo J, Redinger N, Robertson BD, Wiles S, Ward TH, Parish T, Ripoll J, Bancroft GJ, Schaible UE.
    A new in vivo model to test anti-tuberculosis drugs using fluorescence imaging.
    J Antimicrob Chemother. 2012 Aug;67(8):1948-60 doi: 10.1093/jac/dks161
    pmid: 22635525
  • Cao C, Chen Y, Masood R, Sinha UK, Kobielak A.
    α-Catulin Marks the Invasion Front of Squamous Cell Carcinoma and Is Important for Tumor Cell Metastasis.
    Mol Cancer Res. 2012 Jul;10(7):892-903 doi: 10.1158/1541-7786.MCR-12-0169
    pmid: 22648798
  • Ruzina MN, Andrianov BV, Shaĭkhaev GO, Sulimova GE.
    Identification and classification of bovine leukemia virus isolates in Russia and Ukraine based on the pol viral gene polymorphism.
    Genetika. 2012 Jul;48(7):855-62 (in Russian)
    pmid: 22988771
  • Telford WG, Hawley T, Subach F, Verkhusha V, Hawley RG.
    Flow cytometry of fluorescent proteins.
    Methods. 2012 Jul;57(3):318-30 doi: 10.1016/j.ymeth.2012.01.003
    pmid: 22293036
  • Khan MJ, Rizwan Alam M, Waldeck-Weiermair M, Karsten F, Groschner L, Riederer M, Hallström S, Rockenfeller P, Konya V, Heinemann A, Madeo F, Graier WF, Malli R.
    Inhibition of autophagy rescues palmitic acid-induced necroptosis of endothelial cells.
    J Biol Chem. 2012 Jun 15;287(25):21110-20 doi: 10.1074/jbc.M111.319129
    pmid: 22556413
  • Jacoby K, Metzger M, Shen BW, Certo MT, Jarjour J, Stoddard BL, Scharenberg AM.
    Expanding LAGLIDADG endonuclease scaffold diversity by rapidly surveying evolutionary sequence space.
    Nucleic Acids Res. 2012 Jun;40(11):4954-64 doi: 10.1093/nar/gkr1303
    pmid: 22334611
  • Zanet J, Jayo A, Plaza S, Millard T, Parsons M, Stramer B.
    Fascin promotes filopodia formation independent of its role in actin bundling.
    J Cell Biol. 2012 May 14;197(4):477-86 doi: 10.1083/jcb.201110135
    pmid: 22564415
  • Godfrey R, Arora D, Bauer R, Stopp S, Müller JP, Heinrich T, Böhmer SA, Dagnell M, Schnetzke U, Scholl S, Östman A, Böhmer FD.
    Cell transformation by FLT3 ITD in acute myeloid leukemia involves oxidative inactivation of the tumor suppressor protein-tyrosine phosphatase DEP-1/ PTPRJ.
    Blood. 2012 May 10;119(19):4499-511 doi: 10.1182/blood-2011-02-336446
    pmid: 22438257
  • Deng X, Li Z, Zhang W.
    Transcriptome sequencing of Salmonella enterica serovar Enteritidis under desiccation and starvation stress in peanut oil.
    Food Microbiol. 2012 May;30(1):311-5 doi: 10.1016/j.fm.2011.11.001
    pmid: 22265317
  • Iida R, Ueki M, Yasuda T.
    Identification of Rhit as a novel transcriptional repressor of human Mpv17-like protein with a mitigating effect on mitochondrial dysfunction, and its transcriptional regulation by FOXD3 and GABP.
    Free Radic Biol Med. 2012 Apr 15;52(8):1413-22 doi: 10.1016/j.freeradbiomed.2012.01.003
    pmid: 22306510
  • Gurskaya NG, Staroverov DB, Zhang L, Fradkov AF, Markina NM, Pereverzev AP, Lukyanov KA.
    Analysis of alternative splicing of cassette exons at single-cell level using two fluorescent proteins.
    Nucleic Acids Res. 2012 Apr 1;40(8):e57 doi: 10.1093/nar/gkr1314
    pmid: 22259036
  • Choi WG, Swanson SJ, Gilroy S.
    High-resolution imaging of Ca2+ , redox status, ROS and pH using GFP biosensors.
    Plant J. 2012 Apr;70(1):118-28 doi: 10.1111/j.1365-313X.2012.04917.x
    pmid: 22449047
  • Yin BC, Liu YQ, Ye BC.
    One-step, multiplexed fluorescence detection of microRNAs based on duplex-specific nuclease signal amplification.
    J Am Chem Soc. 2012 Mar 21;134(11):5064-7 doi: 10.1021/ja300721s
    pmid: 22394262
  • Ryan SD, Bhanot K, Ferrier A, De Repentigny Y, Chu A, Blais A, Kothary R.
    Microtubule stability, Golgi organization, and transport flux require dystonin-a2-MAP1B interaction.
    J Cell Biol. 2012 Mar 19;196(6):727-42 doi: 10.1083/jcb.201107096
    pmid: 22412020
  • Anderson DD, Woeller CF, Chiang EP, Shane B, Stover PJ.
    Serine hydroxymethyltransferase anchors de novo thymidylate synthesis pathway to nuclear lamina for DNA synthesis.
    J Biol Chem. 2012 Mar 2;287(10):7051-62 doi: 10.1074/jbc.M111.333120
    pmid: 22235121
  • Back P, De Vos WH, Depuydt GG, Matthijssens F, Vanfleteren JR, Braeckman BP.
    Exploring real-time in vivo redox biology of developing and aging Caenorhabditis elegans.
    Free Radic Biol Med. 2012 Mar 1;52(5):850-9 doi: 10.1016/j.freeradbiomed.2011.11.037
    pmid: 22226831
  • Numata T, Sato K, Christmann J, Marx R, Mori Y, Okada Y, Wehner F.
    The ΔC splice-variant of TRPM2 is the hypertonicity-induced cation channel in HeLa cells, and the ecto-enzyme CD38 mediates its activation.
    J Physiol. 2012 Mar 1;590(Pt 5):1121-38 doi: 10.1113/jphysiol.2011.220947
    pmid: 22219339
  • Ray P, Lewin SA, Mihalko LA, Lesher-Perez SC, Takayama S, Luker KE, Luker GD.
    Secreted CXCL12 (SDF-1) forms dimers under physiological conditions.
    Biochem J. 2012 Mar 1;442(2):433-42 doi: 10.1042/BJ20111341
    pmid: 22142194
  • Dower K, Filone CM, Hodges EN, Bjornson ZB, Rubins KH, Brown LE, Schaus S, Hensley LE, Connor JH.
    Identification of a pyridopyrimidinone inhibitor of orthopoxviruses from a diversity-oriented synthesis library.
    J Virol. 2012 Mar;86(5):2632-40 doi: 10.1128/JVI.05416-11
    pmid: 22205744
  • Goh T, Joi S, Mimura T, Fukaki H.
    The establishment of asymmetry in Arabidopsis lateral root founder cells is regulated by LBD16/ASL18 and related LBD/ASL proteins.
    Development. 2012 Mar;139(5):883-93 doi: 10.1242/dev.071928
    pmid: 22278921
  • Gusdon AM, Zhu J, Van Houten B, Chu CT.
    ATP13A2 regulates mitochondrial bioenergetics through macroautophagy.
    Neurobiol Dis. 2012 Mar;45(3):962-72 doi: 10.1016/j.nbd.2011.12.015
    pmid: 22198378
  • Sauvage C, Vagner M, Derôme N, Audet C, Bernatchez L.
    Coding Gene Single Nucleotide Polymorphism Mapping and Quantitative Trait Loci Detection for Physiological Reproductive Traits in Brook Charr, Salvelinus fontinalis.
    G3 (Bethesda). 2012 Mar;2(3):379-92 doi: 10.1534/g3.111.001867
    pmid: 22413092
  • von Reumont BM, Jenner RA, Wills MA, Dell'ampio E, Pass G, Ebersberger I, Meyer B, Koenemann S, Iliffe TM, Stamatakis A, Niehuis O, Meusemann K, Misof B.
    Pancrustacean phylogeny in the light of new phylogenomic data: support for remipedia as the possible sister group of hexapoda.
    Mol Biol Evol. 2012 Mar;29(3):1031-45 doi: 10.1093/molbev/msr270
    pmid: 22049065
  • Kyriazis GA, Soundarapandian MM, Tyrberg B.
    Sweet taste receptor signaling in beta cells mediates fructose-induced potentiation of glucose-stimulated insulin secretion.
    Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):E524-32 doi: 10.1073/pnas.1115183109
    pmid: 22315413
  • Navaroli DM, Bellvé KD, Standley C, Lifshitz LM, Cardia J, Lambright D, Leonard D, Fogarty KE, Corvera S.
    Rabenosyn-5 defines the fate of the transferrin receptor following clathrin-mediated endocytosis.
    Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):E471-80 doi: 10.1073/pnas.1115495109
    pmid: 22308388
  • Gijavanekar C, Strych U, Fofanov Y, Fox GE, Willson RC.
    Rare target enrichment for ultrasensitive PCR detection using cot-rehybridization and duplex-specific nuclease.
    Analytical Biochemistry. 2012 Feb 1;421(1):81-5 doi: 10.1016/j.ab.2011.11.010
    pmid: 22155054
  • Cheng WY, Currier J, Bromberg PA, Silbajoris R, Simmons SO, Samet JM.
    Linking oxidative events to inflammatory and adaptive gene expression induced by exposure to an organic particulate matter component.
    Environ Health Perspect. 2012 Feb;120(2):267-74 doi: 10.1289/ehp.1104055
    pmid: 21997482
  • Huang V, Place RF, Portnoy V, Wang J, Qi Z, Jia Z, Yu A, Shuman M, Yu J, Li LC.
    Upregulation of Cyclin B1 by miRNA and its implications in cancer.
    Nucleic Acids Res. 2012 Feb;40(4):1695-707 doi: 10.1093/nar/gkr934
    pmid: 22053081
  • Lai Z, Kane NC, Kozik A, Hodgins KA, Dlugosch KM, Barker MS, Matvienko M, Yu Q, Turner KG, Pearl SA, Bell GD, Zou Y, Grassa C, Guggisberg A, Adams KL, Anderson JV, Horvath DP, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH.
    Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression.
    Am J Bot. 2012 Feb;99(2):209-18 doi: 10.3732/ajb.1100313
    pmid: 22058181
  • Sanders KM, Zhu MH, Britton F, Koh SD, Ward SM.
    Anoctamins and gastrointestinal smooth muscle excitability.
    Exp Physiol. 2012 Feb;97(2):200-6 doi: 10.1113/expphysiol.2011.058248
    pmid: 22002868
  • Svistunova DM, Musinova YR, Polyakov VY, Sheval EV.
    A simple method for the immunocytochemical detection of proteins inside nuclear structures that are inaccessible to specific antibodies.
    J Histochem Cytochem. 2012 Feb;60(2):152-8 doi: 10.1369/0022155411429704
    pmid: 22114257
  • Swennenhuis JF, Foulk B, Coumans FA, Terstappen LW.
    Construction of repeat-free fluorescence in situ hybridization probes.
    Nucleic Acids Res. 2012 Feb;40(3):e20 doi: 10.1093/nar/gkr1123
    pmid: 22123742
  • Yoshii H, Yoshii Y, Asai T, Furukawa T, Takaichi S, Fujibayashi Y.
    Photo-excitation of carotenoids causes cytotoxicity via singlet oxygen production.
    Biochem Biophys Res Commun. 2012 Jan 6;417(1):640-5 doi: 10.1016/j.bbrc.2011.12.024
    pmid: 22185691
  • Li B, Shahid R, Peshkepija P, Zimmer M.
    Water Diffusion In And Out Of The β-Barrel Of GFP and The Fast Maturing Fluorescent Protein, TurboGFP.
    Chem Phys. 2012 Jan 1;392(1):143-148
    pmid: 22582003
  • Lobert VH, Stenmark H.
    The ESCRT machinery mediates polarization of fibroblasts through regulation of myosin light chain.
    J Cell Sci. 2012 Jan 1;125(Pt 1):29-36 doi: 10.1242/jcs.088310
    pmid: 22266905
  • Murakami T, Yang SP, Xie L, Kawano T, Fu D, Mukai A, Bohm C, Chen F, Robertson J, Suzuki H, Tartaglia GG, Vendruscolo M, Kaminski Schierle GS, Chan FT, Moloney A, Crowther D, Kaminski CF, Zhen M, St George-Hyslop P.
    ALS mutations in FUS cause neuronal dysfunction and death in Caenorhabditis elegans by a dominant gain-of-function mechanism.
    Hum Mol Genet. 2012 Jan 1;21(1):1-9 doi: 10.1093/hmg/ddr417
    pmid: 21949354
  • Pigolev AV, Timoshevsky DS, Klimov VV.
    Effect of K223E and K226E amino acid substitutions in PsbO protein of photosystem 2 on stability and functional activity of the water-oxidizing complex in Chlamydomonas reinhardtii.
    Biochemistry (Mosc). 2012 Jan;77(1):71-7 doi: 10.1134/S0006297912010087
    pmid: 22339635
  • Caysa H, Hoffmann S, Luetzkendorf J, Mueller LP, Unverzagt S, Mäder K, Mueller T.
    Monitoring of xenograft tumor growth and response to chemotherapy by non-invasive in vivo multispectral fluorescence imaging.
    PLoS One. 2012;7(10):e47927 doi: 10.1371/journal.pone.0047927
    pmid: 23112873
  • Eaton CJ, Cabrera IE, Servin JA, Wright SJ, Cox MP, Borkovich KA.
    The Guanine Nucleotide Exchange Factor RIC8 Regulates Conidial Germination through Gα Proteins in Neurospora crassa.
    PLoS One. 2012;7(10):e48026 doi: 10.1371/journal.pone.0048026
    pmid: 23118921
  • Feine I, Pinkas I, Salomon Y, Scherz A.
    Local oxidative stress expansion through endothelial cells--a key role for gap junction intercellular communication.
    PLoS One. 2012;7(7):e41633 doi: 10.1371/journal.pone.0041633
    pmid: 22911831
  • Garczynski SF, Wanner KW, Unruh TR.
    Identification and initial characterization of the 3′ end of gene transcripts encoding putative members of the pheromone receptor subfamily in Lepidoptera.
    Insect Science. 2012;19(1):64-74 ISI:000299391800008 http://onlinelibrary.wiley.com
  • Miranda JG, Weaver AL, Qin Y, Park JG, Stoddard CI, Lin MZ, Palmer AE.
    New alternately colored FRET sensors for simultaneous monitoring of Zn(2+) in multiple cellular locations.
    PLoS One. 2012;7(11):e49371 doi: 10.1371/journal.pone.0049371
    pmid: 23173058
  • Pase L, Nowell CJ, Lieschke GJ.
    In vivo real-time visualization of leukocytes and intracellular hydrogen peroxide levels during a zebrafish acute inflammation assay.
    Methods Enzymol. 2012;506:135-56 doi: 10.1016/B978-0-12-391856-7.00032-9
    pmid: 22341223
  • Savitsky AP, Rusanov AL, Zherdeva VV, Gorodnicheva TV, Khrenova MG, Nemukhin AV.
    FLIM-FRET Imaging of Caspase-3 Activity in Live Cells Using Pair of Red Fluorescent Proteins.
    Theranostics. 2012;2(2):215-26 doi: 10.7150/thno.3885
    pmid: 22375160
  • Watakabe A, Kato S, Kobayashi K, Takaji M, Nakagami Y, Sadakane O, Ohtsuka M, Hioki H, Kaneko T, Okuno H, Kawashima T, Bito H, Kitamura Y, Yamamori T.
    Visualization of cortical projection neurons with retrograde TET-off lentiviral vector.
    PLoS One. 2012;7(10):e46157 doi: 10.1371/journal.pone.0046157
    pmid: 23071541
2011
  • Luker KE, Mihalko LA, Schmidt BT, Lewin SA, Ray P, Shcherbo D, Chudakov DM, Luker GD.
    In vivo imaging of ligand receptor binding with Gaussia luciferase complementation.
    Nat Med. 2011 Dec 4;18(1):172-7 doi: 10.1038/nm.2590
    pmid: 22138753
  • Kondrychyn I, Teh C, Garcia-Lecea M, Guan Y, Kang A, Korzh V.
    Zebrafish Enhancer TRAP transgenic line database ZETRAP 2.0.
    Zebrafish. 2011 Dec;8(4):181-2 doi: 10.1089/zeb.2011.0718
    pmid: 22181660
  • Love NR, Thuret R, Chen Y, Ishibashi S, Sabherwal N, Paredes R, Alves-Silva J, Dorey K, Noble AM, Guille MJ, Sasai Y, Papalopulu N, Amaya E.
    pTransgenesis: a cross-species, modular transgenesis resource.
    Development. 2011 Dec;138(24):5451-8 doi: 10.1242/dev.066498
    pmid: 22110059
  • Saito C, Uemura T, Awai C, Ueda T, Abe H, Nakano A.
    Qualitative difference between "bulb" membranes and other vacuolar membranes.
    Plant Signal Behav. 2011 Dec;6(12):1914-7
    pmid: 22105033
  • Vanlangenakker N, Bertrand MJ, Bogaert P, Vandenabeele P, Vanden Berghe T.
    TNF-induced necroptosis in L929 cells is tightly regulated by multiple TNFR1 complex I and II members.
    Cell Death Dis. 2011 Nov 17;2:e230 doi: 10.1038/cddis.2011.111
    pmid: 22089168
  • Egami Y, Fukuda M, Araki N.
    Rab35 regulates phagosome formation through recruitment of ACAP2 in macrophages during FcγR-mediated phagocytosis.
    J Cell Sci. 2011 Nov 1;124(Pt 21):3557-67 doi: 10.1242/jcs.083881
    pmid: 22045739
  • Yi H, Cho YJ, Won S, Lee JE, Jin Yu H, Kim S, Schroth GP, Luo S, Chun J.
    Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq.
    Nucleic Acids Res. 2011 Nov 1;39(20):e140 doi: 10.1093/nar/gkr617
    pmid: 21880599
  • Currie JD, Stewman S, Schimizzi G, Slep KC, Ma A, Rogers SL.
    The microtubule lattice and plus-end association of Drosophila Mini spindles is spatially regulated to fine-tune microtubule dynamics.
    Mol Biol Cell. 2011 Nov;22(22):4343-61 doi: 10.1091/mbc.E11-06-0520
    pmid: 21965297
  • Glass C, Singla DK.
    MicroRNA-1 transfected embryonic stem cells enhance cardiac myocyte differentiation and inhibit apoptosis by modulating the PTEN/Akt pathway in the infarcted heart.
    Am J Physiol Heart Circ Physiol. 2011 Nov;301(5):H2038-49 doi: 10.1152/ajpheart.00271.2011
    pmid: 21856911
  • Surakasi VP, Mohamed AA, Kim Y.
    RNA interference of β1 integrin subunit impairs development and immune responses of the beet armyworm, Spodoptera exigua.
    J Insect Physiol. 2011 Nov;57(11):1537-44 doi: 10.1016/j.jinsphys.2011.08.006
    pmid: 21856307
  • Housley GD.
    Recent insights into the regulation of breathing.
    Auton Neurosci. 2011 Oct 28;164(1-2):3-5 doi: 10.1016/j.autneu.2011.08.002
    pmid: 21852203
  • Werner ME, Hwang P, Huisman F, Taborek P, Yu CC, Mitchell BJ.
    Actin and microtubules drive differential aspects of planar cell polarity in multiciliated cells.
    J Cell Biol. 2011 Oct 3;195(1):19-26 doi: 10.1083/jcb.201106110
    pmid: 21949415
  • Naoghare PK, Tak YK, Kim MJ, Han E, Song JM.
    Knock-down of argonaute 2 (AGO2) induces apoptosis in myeloid leukaemia cells and inhibits siRNA-mediated silencing of transfected oncogenes in HEK-293 cells.
    Basic Clin Pharmacol Toxicol. 2011 Oct;109(4):274-82 doi: 10.1111/j.1742-7843.2011.00716.x
    pmid: 21535412
  • Wang X, Su B, Liu W, He X, Gao Y, Castellani RJ, Perry G, Smith MA, Zhu X.
    DLP1-dependent mitochondrial fragmentation mediates 1-methyl-4-phenylpyridinium toxicity in neurons: implications for Parkinson's disease.
    Aging Cell. 2011 Oct;10(5):807-23 doi: 10.1111/j.1474-9726.2011.00721.x
    pmid: 21615675
  • Zuccaro A, Lahrmann U, Güldener U, Langen G, Pfiffi S, Biedenkopf D, Wong P, Samans B, Grimm C, Basiewicz M, Murat C, Martin F, Kogel KH.
    Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica.
    PLoS Pathog. 2011 Oct;7(10):e1002290 doi: 10.1371/journal.ppat.1002290
    pmid: 22022265
  • Sartoretto JL, Kalwa H, Pluth MD, Lippard SJ, Michel T.
    Hydrogen peroxide differentially modulates cardiac myocyte nitric oxide synthesis.
    Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):15792-7 doi: 10.1073/pnas.1111331108
    pmid: 21896719
  • Anderson DD, Quintero CM, Stover PJ.
    Identification of a de novo thymidylate biosynthesis pathway in mammalian mitochondria.
    Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15163-8 doi: 10.1073/pnas.1103623108
    pmid: 21876188
  • Chang KT, Niescier RF, Min KT.
    Mitochondrial matrix Ca2+ as an intrinsic signal regulating mitochondrial motility in axons.
    Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15456-61 doi: 10.1073/pnas.1106862108
    pmid: 21876166
  • Rigault P, Boyle B, Lepage P, Cooke JE, Bousquet J, MacKay JJ.
    A white spruce gene catalog for conifer genome analyses.
    Plant Physiol. 2011 Sep;157(1):14-28 doi: 10.1104/pp.111.179663
    pmid: 21730200
  • Rondanino C, Poland PA, Kinlough CL, Li H, Rbaibi Y, Myerburg MM, Al-bataineh MM, Kashlan OB, Pastor-Soler NM, Hallows KR, Weisz OA, Apodaca G, Hughey RP.
    Galectin-7 modulates the length of the primary cilia and wound repair in polarized kidney epithelial cells.
    Am J Physiol Renal Physiol. 2011 Sep;301(3):F622-33 doi: 10.1152/ajprenal.00134.2011
    pmid: 21677144
  • Su CL, Chao YT, Alex Chang YC, Chen WC, Chen CY, Lee AY, Hwa KT, Shih MC.
    De novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome.
    Plant Cell Physiol. 2011 Sep;52(9):1501-14 doi: 10.1093/pcp/pcr097
    pmid: 21771864
  • Hayashi K, Suzuki A, Hirai S, Kurihara Y, Hoogenraad CC, Ohno S.
    Maintenance of dendritic spine morphology by partitioning-defective 1b through regulation of microtubule growth.
    J Neurosci. 2011 Aug 24;31(34):12094-103 doi: 10.1523/JNEUROSCI.0751-11.2011
    pmid: 21865452
  • Nadell CD, Bassler BL.
    A fitness trade-off between local competition and dispersal in Vibrio cholerae biofilms.
    Proc Natl Acad Sci U S A. 2011 Aug 23;108(34):14181-5 doi: 10.1073/pnas.1111147108
    pmid: 21825170
  • Bekal S, Domier LL, Niblack TL, Lambert KN.
    Discovery and initial analysis of novel viral genomes in the soybean cyst nematode.
    J Gen Virol. 2011 Aug;92(Pt 8):1870-9 doi: 10.1099/vir.0.030585-0
    pmid: 21490246
  • Ciesek S, Westhaus S, Wicht M, Wappler I, Henschen S, Sarrazin C, Hamdi N, Abdelaziz AI, Strassburg CP, Wedemeyer H, Manns MP, Pietschmann T, von Hahn T.
    Impact of intra- and interspecies variation of occludin on its function as coreceptor for authentic hepatitis C virus particles.
    J Virol. 2011 Aug;85(15):7613-21 doi: 10.1128/JVI.00212-11
    pmid: 21632765
  • Tak YK, Naoghare PK, Han E, Song JM.
    VEGF inhibitor (Iressa) arrests histone deacetylase expression: single-cell cotransfection imaging cytometry for multi-target-multi-drug analysis.
    J Cell Physiol. 2011 Aug;226(8):2115-22 doi: 10.1002/jcp.22540
    pmid: 21520063
  • Wang L, Toomey NL, Diaz LA, Walker G, Ramos JC, Barber GN, Ning S.
    Oncogenic IRFs provide a survival advantage for Epstein-Barr virus- or human T-cell leukemia virus type 1-transformed cells through induction of BIC expression.
    J Virol. 2011 Aug;85(16):8328-37 doi: 10.1128/JVI.00570-11
    pmid: 21680528
  • Shagina IA, Bogdanova EA, Altshuler IM, Lukyanov SA, Shagin DA.
    Application of the duplex-specific nuclease for fast analysis of single nucleotide polymorphisms and detection of target DNA in complex PCR products.
    Bioorg Khim. 2011 Jul-Aug;37(4):522-9 (in Russian)
    pmid: 22096995
  • Lombardi ML, Jaalouk DE, Shanahan CM, Burke B, Roux KJ, Lammerding J.
    The interaction between nesprins and sun proteins at the nuclear envelope is critical for force transmission between the nucleus and cytoskeleton.
    J Biol Chem. 2011 Jul 29;286(30):26743-53 doi: 10.1074/jbc.M111.233700
    pmid: 21652697
  • Shtutman M, Baig M, Levina E, Hurteau G, Lim CU, Broude E, Nikiforov M, Harkins TT, Carmack CS, Ding Y, Wieland F, Buttyan R, Roninson IB.
    Tumor-specific silencing of COPZ2 gene encoding coatomer protein complex subunit ζ 2 renders tumor cells dependent on its paralogous gene COPZ1.
    Proc Natl Acad Sci U S A. 2011 Jul 26;108(30):12449-54 doi: 10.1073/pnas.1103842108
    pmid: 21746916
  • Dragulescu-Andrasi A, Chan CT, De A, Massoud TF, Gambhir SS.
    Bioluminescence resonance energy transfer (BRET) imaging of protein-protein interactions within deep tissues of living subjects.
    Proc Natl Acad Sci U S A. 2011 Jul 19;108(29):12060-5 doi: 10.1073/pnas.1100923108
    pmid: 21730157
  • Liu M, Yuan M, Lou X, Mao H, Zheng D, Zou R, Zou N, Tang X, Zhao J.
    Label-free optical detection of single-base mismatches by the combination of nuclease and gold nanoparticles.
    Biosens Bioelectron. 2011 Jul 15;26(11):4294-300 doi: 10.1016/j.bios.2011.04.014
    pmid: 21605966
  • Koga H, Martinez-Vicente M, Macian F, Verkhusha VV, Cuervo AM.
    A photoconvertible fluorescent reporter to track chaperone-mediated autophagy.
    Nat Commun. 2011 Jul 12;2:386 doi: 10.1038/ncomms1393
    pmid: 21750540
  • Orth JD, Kohler RH, Foijer F, Sorger PK, Weissleder R, Mitchison TJ.
    Analysis of mitosis and antimitotic drug responses in tumors by in vivo microscopy and single-cell pharmacodynamics.
    Cancer Res. 2011 Jul 1;71(13):4608-16 doi: 10.1158/0008-5472.CAN-11-0412
    pmid: 21712408
  • Pavlyukov MS, Antipova NV, Balashova MV, Vinogradova TV, Kopantzev EP, Shakhparonov MI.
    Survivin monomer plays an essential role in apoptosis regulation.
    J Biol Chem. 2011 Jul 1;286(26):23296-307 doi: 10.1074/jbc.M111.237586
    pmid: 21536684
  • Snaith HA, Thompson J, Yates JR 3rd, Sawin KE.
    Characterization of Mug33 reveals complementary roles for actin cable-dependent transport and exocyst regulators in fission yeast exocytosis.
    J Cell Sci. 2011 Jul 1;124(Pt 13):2187-99 doi: 10.1242/jcs.084038
    pmid: 21652630
  • Adamidi C, Wang Y, Gruen D, Mastrobuoni G, You X, Tolle D, Dodt M, Mackowiak SD, Gogol-Doering A, Oenal P, Rybak A, Ross E, Sánchez Alvarado A, Kempa S, Dieterich C, Rajewsky N, Chen W.
    De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics.
    Genome Res. 2011 Jul;21(7):1193-200 doi: 10.1101/gr.113779.110
    pmid: 21536722
  • Dower K, Rubins KH, Hensley LE, Connor JH.
    Development of Vaccinia reporter viruses for rapid, high content analysis of viral function at all stages of gene expression.
    Antiviral Res. 2011 Jul;91(1):72-80 doi: 10.1016/j.antiviral.2011.04.014
    pmid: 21569797
  • Pletneva NV, Pletnev VZ, Shemiakina II, Chudakov DM, Artemyev I, Wlodawer A, Dauter Z, Pletnev S.
    Crystallographic study of red fluorescent protein eqFP578 and its far-red variant Katushka reveals opposite pH-induced isomerization of chromophore.
    Protein Sci. 2011 Jul;20(7):1265-74 doi: 10.1002/pro.654
    pmid: 21563226
  • Feldmeyer B, Wheat CW, Krezdorn N, Rotter B, Pfenninger M.
    Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance.
    BMC Genomics. 2011 Jun 16;12:317 doi: 10.1186/1471-2164-12-317
    pmid: 21679424
  • Vogel H, Altincicek B, Glöckner G, Vilcinskas A.
    A comprehensive transcriptome and immune-gene repertoire of the lepidopteran model host Galleria mellonella.
    BMC Genomics. 2011 Jun 11;12:308 doi: 10.1186/1471-2164-12-308
    pmid: 21663692
  • Hojman P, Spanggaard I, Olsen CH, Gehl J, Gissel H.
    Calcium electrotransfer for termination of transgene expression in muscle.
    Hum Gene Ther. 2011 Jun;22(6):753-60 doi: 10.1089/hum.2010.209
    pmid: 21470044
  • Luo H, Yang J, Jin H, Huang C, Fu J, Yang F, Gong H, Zeng S, Luo Q, Zhang Z.
    Tetrameric far-red fluorescent protein as a scaffold to assemble an octavalent peptide nanoprobe for enhanced tumor targeting and intracellular uptake in vivo.
    FASEB J. 2011 Jun;25(6):1865-73 doi: 10.1096/fj.10-174318
    pmid: 21350116
  • Verreault M, Strutt D, Masin D, Fink D, Gill R, Bally MB.
    Development of glioblastoma cell lines expressing red fluorescence for non-invasive live imaging of intracranial tumors.
    Anticancer Res. 2011 Jun;31(6):2161-71
    pmid: 21737636
  • Brickley K, Stephenson FA.
    Trafficking kinesin protein (TRAK)-mediated transport of mitochondria in axons of hippocampal neurons.
    J Biol Chem. 2011 May 20;286(20):18079-92 doi: 10.1074/jbc.M111.236018
    pmid: 21454691
  • Milan M, Coppe A, Reinhardt R, Cancela LM, Leite RB, Saavedra C, Ciofi C, Chelazzi G, Patarnello T, Bortoluzzi S, Bargelloni L.
    Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental moni